Factsheet for Solyc11g040140.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 7
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	cytosol, extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005591	Potato	extracellular	96.0	97.3
GSMUA_Achr8P34300_001	Banana	cytosol	71.67	78.47
KRG94750	Soybean	endoplasmic reticulum	74.0	75.25
KRH06776	Soybean	endoplasmic reticulum	73.67	74.92
KRH70105	Soybean	nucleus	74.33	72.17
AT2G06850.1	Thale cress	extracellular	71.0	71.96
CDY69237	Canola	extracellular	70.67	71.86
Bra013164.1-P	Field mustard	extracellular	70.33	71.53
CDX93096	Canola	extracellular	70.33	71.53
TraesCS4A01G172600.1	Wheat	unclear	69.67	71.09
TraesCSU01G175000.1	Wheat	vacuole	69.33	70.75
TraesCS4D01G142800.1	Wheat	extracellular	69.33	70.75
Zm00001d052651_P001	Maize	extracellular	68.0	68.69
HORVU4Hr1G028720.1	Barley	extracellular, vacuole	68.67	68.21
Os11t0539200-01	Rice	extracellular	67.0	68.14
KRG94748	Soybean	extracellular, vacuole	58.67	67.95
OQU83588	Sorghum	extracellular	68.0	67.33
Solyc11g065600.1.1	Tomato	nucleus	65.33	66.89
Solyc01g099630.2.1	Tomato	extracellular	64.0	64.86
KRH06775	Soybean	endoplasmic reticulum	74.33	64.64
Solyc12g098610.1.1	Tomato	nucleus	47.33	54.41
Solyc07g006870.2.1	Tomato	extracellular, vacuole	49.33	52.48
Solyc09g092520.2.1	Tomato	nucleus	47.67	51.81
Solyc02g091920.2.1	Tomato	nucleus	49.67	50.51
Solyc07g052980.2.1	Tomato	extracellular	48.33	48.99
Solyc05g046290.2.1	Tomato	extracellular	46.67	48.61
Solyc07g006860.2.1	Tomato	extracellular	46.0	48.42
Solyc03g098430.2.1	Tomato	extracellular	45.67	48.41
Solyc03g093080.2.1	Tomato	extracellular	46.0	48.25
Solyc12g017240.1.1	Tomato	extracellular	46.0	47.75
Solyc07g056000.2.1	Tomato	extracellular, nucleus	45.67	47.74
Solyc03g093120.2.1	Tomato	extracellular	45.33	47.55
Solyc03g093130.2.1	Tomato	extracellular	45.33	47.39
Solyc07g009380.2.1	Tomato	extracellular, nucleus	43.33	47.27
Solyc07g055990.2.1	Tomato	nucleus	45.33	46.9
Solyc03g031800.2.1	Tomato	extracellular	46.0	46.78
Solyc03g093110.2.1	Tomato	extracellular	44.67	46.69
Solyc02g080160.2.1	Tomato	extracellular	45.0	45.3
Solyc10g005350.2.1	Tomato	extracellular	43.0	44.79
Solyc01g106650.2.1	Tomato	extracellular, vacuole	43.67	44.71
Solyc12g007260.1.1	Tomato	extracellular	43.0	44.18
Solyc12g007250.1.1	Tomato	extracellular	42.33	43.64
Solyc12g007270.1.1	Tomato	extracellular	42.0	43.0
Solyc12g011030.1.1	Tomato	nucleus	39.0	42.24
Solyc07g006850.1.1	Tomato	golgi	44.67	39.18
GSMUA_Achr7P02620_001	Banana	endoplasmic reticulum, extracellular	57.67	39.14

Protein Annotations

Gene3D:2.60.120.200	MapMan:50.2.4	InterPro:ConA-like_dom_sf	InterPro:GH16	InterPro:GH16_AS	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006073	GO:GO:0008150	GO:GO:0008152
GO:GO:0009505	GO:GO:0009506	GO:GO:0009507	GO:GO:0009536	GO:GO:0009605	GO:GO:0009612
GO:GO:0009628	GO:GO:0009645	GO:GO:0009653	GO:GO:0009719	GO:GO:0009733	GO:GO:0009826
GO:GO:0009987	GO:GO:0010411	GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0016740
GO:GO:0016762	GO:GO:0016787	GO:GO:0016798	GO:GO:0030312	GO:GO:0040007	GO:GO:0042546
GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757	UniProt:K4D7Y8	PFAM:PF00722	PFAM:PF06955
PIRSF:PIRSF005604	ScanProsite:PS01034	PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF97	SUPFAM:SSF49899
SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc11g040140.1	EnsemblPlants:Solyc11g040140.1.1	UniParc:UPI0002769F81	InterPro:XET_C	InterPro:XTH

Description

Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:K4D7Y8]

Coordinates

chr11:-:39807936..39810801

Molecular Weight (calculated)

34833.1 Da

IEP (calculated)

8.630

GRAVY (calculated)

-0.624

Length

300 amino acids

Sequence
(BLAST)

001: MGFKWTMMLV LCVLIGGSMG AKPNKPIDVP FGRNYEPSWA FDHIKYLNGG SEIQLSLDNR TGTGFQSKGS YLFGHFSMHI KMVAGDSAGT VTAFYLSSQN
101: SEHDEIDFEF LGNKTGEPYI LQTNVYTGGK GDKEQRIYLW FDPTKDYHTY SVLWNLHQIV FFVDEYPIRV FKNNKNLGVK FPFDQSMKIY SSLWEADDWA
201: TRGGLEKIDW SNAPFVASYK GFHIDGCESS VNAKFCANQG KSWWDQKEFQ DLDKTQWRLL RRVRDKYTIY NYCTDKKRFS TTPIECKRNR DVPRNSRKEN

Best Arabidopsis Sequence Match ( AT5G13870.3 )
(BLAST)

001: MGRLSSTLCL TFLILATVAF GVPPKKSINV PFGRNYFPTW AFDHIKYLNG GSEVHLVLDK YTGTGFQSKG SYLFGHFSMH IKMVAGDSAG TVTAFYLSSQ
101: NSEHDEIDFE FLGNRTGQPY ILQTNVFTGG AGNREQRINL WFDPSKDYHS YSVLWNMYQI VFFVDDVPIR VFKNSKDVGV KFPFNQPMKI YSSLWNADDW
201: ATRGGLEKTN WEKAPFVASY RGFHVDGCEA SVNAKFCETQ GKRWWDQKEF QDLDANQYKR LKWVRKRYTI YNYCTDRVRF PVPPPECRRD RDI

Arabidopsis Description

XTH5Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:Q67Z90]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.