Factsheet for Solyc11g065600.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	cytosol, extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028324	Potato	vacuole	96.25	95.59
Solyc01g099630.2.1	Tomato	extracellular	81.91	81.08
Solyc11g040140.1.1	Tomato	extracellular	66.89	65.33
Solyc12g098610.1.1	Tomato	nucleus	48.12	54.02
Solyc03g093080.2.1	Tomato	extracellular	48.46	49.65
Solyc07g006870.2.1	Tomato	extracellular, vacuole	47.78	49.65
Solyc09g092520.2.1	Tomato	nucleus	46.76	49.64
Solyc03g093130.2.1	Tomato	extracellular	48.12	49.13
Solyc03g093120.2.1	Tomato	extracellular	47.78	48.95
Solyc03g093110.2.1	Tomato	extracellular	47.44	48.43
Solyc07g006860.2.1	Tomato	extracellular	47.1	48.42
Solyc05g046290.2.1	Tomato	extracellular	47.44	48.26
Solyc03g031800.2.1	Tomato	extracellular	47.78	47.46
Solyc02g091920.2.1	Tomato	nucleus	47.78	47.46
Solyc07g009380.2.1	Tomato	extracellular, nucleus	44.37	47.27
Solyc12g017240.1.1	Tomato	extracellular	46.42	47.06
Solyc02g080160.2.1	Tomato	extracellular	47.1	46.31
Solyc03g098430.2.1	Tomato	extracellular	44.37	45.94
Solyc07g052980.2.1	Tomato	extracellular	46.08	45.61
Solyc07g056000.2.1	Tomato	extracellular, nucleus	44.37	45.3
Solyc10g005350.2.1	Tomato	extracellular	43.69	44.44
Solyc07g055990.2.1	Tomato	nucleus	43.69	44.14
Solyc01g106650.2.1	Tomato	extracellular, vacuole	43.69	43.69
Solyc12g007260.1.1	Tomato	extracellular	43.34	43.49
Solyc12g007270.1.1	Tomato	extracellular	43.34	43.34
Solyc12g007250.1.1	Tomato	extracellular	42.32	42.61
Solyc12g011030.1.1	Tomato	nucleus	37.88	40.07
Solyc07g006850.1.1	Tomato	golgi	44.03	37.72

Protein Annotations

Gene3D:2.60.120.200	MapMan:50.2.4	InterPro:ConA-like_dom_sf	InterPro:GH16	InterPro:GH16_AS	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0005975	GO:GO:0006073	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010411
GO:GO:0016043	GO:GO:0016740	GO:GO:0016762	GO:GO:0016787	GO:GO:0016798	GO:GO:0030312
GO:GO:0042546	GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757	UniProt:K4D9H0	PFAM:PF00722
PFAM:PF06955	PIRSF:PIRSF005604	ScanProsite:PS01034	PFscan:PS51257	PFscan:PS51762	PANTHER:PTHR31062
PANTHER:PTHR31062:SF97	SUPFAM:SSF49899	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc11g065600.1	EnsemblPlants:Solyc11g065600.1.1	UniParc:UPI0002769AF5
InterPro:XET_C	InterPro:XTH	:	:	:	:

Description

Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:K4D9H0]

Coordinates

chr11:-:51118385..51120727

Molecular Weight (calculated)

33592.7 Da

IEP (calculated)

7.897

GRAVY (calculated)

-0.401

Length

293 amino acids

Sequence
(BLAST)

001: MKGVLVAFVL INLSILASCG APRKVIDVPF WNNYEPSWSS HHIKYLNGGT TAELLLDKSS GTGFQSKRSY LFGHFSMKMK LVGGDSAGVV TAFYLSSTNA
101: EHDEIDFEFL GNRTGQPYIL QTNVFTGGKG DREQRIYLWF DPTKDFHSYS VLWNTYQIAI FVDDVPIRVF KNSKDIGVKF PFNQPMKIYS SLWNADDWAT
201: RGGLEKTNWS GAPFIASYTS FHIDGCEAVT PQEVQVCNTN GMKWWDQKAF QDLDGPEYRK LHRVRQNFTI YNYCTDRKRY PTLPLECTRD RDL

Best Arabidopsis Sequence Match ( AT5G13870.3 )
(BLAST)

001: MGRLSSTLCL TFLILATVAF GVPPKKSINV PFGRNYFPTW AFDHIKYLNG GSEVHLVLDK YTGTGFQSKG SYLFGHFSMH IKMVAGDSAG TVTAFYLSSQ
101: NSEHDEIDFE FLGNRTGQPY ILQTNVFTGG AGNREQRINL WFDPSKDYHS YSVLWNMYQI VFFVDDVPIR VFKNSKDVGV KFPFNQPMKI YSSLWNADDW
201: ATRGGLEKTN WEKAPFVASY RGFHVDGCEA SVNAKFCETQ GKRWWDQKEF QDLDANQYKR LKWVRKRYTI YNYCTDRVRF PVPPPECRRD RDI

Arabidopsis Description

XTH5Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:Q67Z90]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.