Factsheet for PGSC0003DMT400028324

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	cytosol, extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g065600.1.1	Tomato	nucleus	95.59	96.25
PGSC0003DMT400063689	Potato	vacuole	82.37	82.09
PGSC0003DMT400005591	Potato	extracellular	67.12	66.89
PGSC0003DMT400011902	Potato	extracellular	49.15	51.97
PGSC0003DMT400038413	Potato	extracellular	49.49	51.05
PGSC0003DMT400005949	Potato	cytosol	33.22	50.52
PGSC0003DMT400056316	Potato	extracellular	47.12	50.36
PGSC0003DMT400036329	Potato	extracellular	47.8	50.0
PGSC0003DMT400048242	Potato	extracellular	47.12	49.82
PGSC0003DMT400048241	Potato	extracellular	47.8	49.47
PGSC0003DMT400020314	Potato	cytosol, nucleus, peroxisome	45.08	48.54
PGSC0003DMT400055138	Potato	extracellular	48.47	48.47
PGSC0003DMT400013128	Potato	extracellular	25.76	47.5
PGSC0003DMT400026398	Potato	extracellular	45.42	47.35
PGSC0003DMT400061841	Potato	extracellular	47.12	47.12
PGSC0003DMT400079856	Potato	extracellular	45.42	46.69
PGSC0003DMT400067358	Potato	extracellular	46.78	46.62
PGSC0003DMT400005342	Potato	extracellular	46.78	46.31
PGSC0003DMT400044559	Potato	extracellular	45.42	46.21
PGSC0003DMT400020122	Potato	extracellular	45.08	45.86
PGSC0003DMT400044562	Potato	extracellular	44.41	45.64
PGSC0003DMT400048240	Potato	golgi	43.73	37.72

Protein Annotations

EntrezGene:102578319	Gene3D:2.60.120.200	MapMan:50.2.4	InterPro:ConA-like_dom_sf	InterPro:GH16	InterPro:GH16_AS
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618
GO:GO:0005623	GO:GO:0005975	GO:GO:0006073	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010411	GO:GO:0016043	GO:GO:0016740	GO:GO:0016762	GO:GO:0016787	GO:GO:0016798
GO:GO:0030312	GO:GO:0042546	GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757	UniProt:M1AQZ8
PFAM:PF00722	PFAM:PF06955	EnsemblPlantsGene:PGSC0003DMG402010918	PGSC:PGSC0003DMG402010918	EnsemblPlants:PGSC0003DMT400028324	PIRSF:PIRSF005604
ScanProsite:PS01034	PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF97	SUPFAM:SSF49899	SignalP:SignalP-noTM
UniParc:UPI000295D409	InterPro:XET_C	RefSeq:XP_006367741.1	InterPro:XTH	:	:

Description

Xyloglucan endotransglycosylase [Source:PGSC_GENE;Acc:PGSC0003DMG402010918]

Coordinates

chr11:-:37383583..37385779

Molecular Weight (calculated)

33847.1 Da

IEP (calculated)

7.885

GRAVY (calculated)

-0.395

Length

295 amino acids

Sequence
(BLAST)

001: MAMKGVLVAF VMINLSILAN CGAPRKAIDV PFWNNYEPSW SSHHIKYLNG GTTAELLLDK SSGTGFQSKR SYLFGHFSMK MKLVGGDSAG VVTAFYLSST
101: NAEHDEIDFE FLGNRTGQPY ILQTNVFTGG KGDREQRIYL WFDPTKDFHS YSVLWNTFQI VIFVDDVPIR VFKNSKDIGV KFPFNQPMKI YSSLWNADDW
201: ATRGGLEKTD WSGAPFTASY TSFHIDGCEA VTPQEVQVCN TNGMKWWDQK AFQDLDGPQY RKLQWVRQKF TIYNYCTDRK RYPTLPLECT RDRDL

Best Arabidopsis Sequence Match ( AT5G13870.3 )
(BLAST)

001: MGRLSSTLCL TFLILATVAF GVPPKKSINV PFGRNYFPTW AFDHIKYLNG GSEVHLVLDK YTGTGFQSKG SYLFGHFSMH IKMVAGDSAG TVTAFYLSSQ
101: NSEHDEIDFE FLGNRTGQPY ILQTNVFTGG AGNREQRINL WFDPSKDYHS YSVLWNMYQI VFFVDDVPIR VFKNSKDVGV KFPFNQPMKI YSSLWNADDW
201: ATRGGLEKTN WEKAPFVASY RGFHVDGCEA SVNAKFCETQ GKRWWDQKEF QDLDANQYKR LKWVRKRYTI YNYCTDRVRF PVPPPECRRD RDI

Arabidopsis Description

XTH5Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:Q67Z90]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.