Factsheet for PGSC0003DMT400013128

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g106650.2.1	Tomato	extracellular, vacuole	93.12	50.85
VIT_03s0088g00650.t01	Wine grape	extracellular, vacuole	65.62	35.59
KRG91154	Soybean	extracellular	63.12	34.12
Bra040716.1-P	Field mustard	vacuole	63.12	34.01
KRH35625	Soybean	vacuole	62.5	33.78
AT2G14620.1	Thale cress	vacuole	63.12	33.78
CDX71167	Canola	vacuole	62.5	33.67
GSMUA_Achr1P14290_001	Banana	vacuole	60.0	32.43
PGSC0003DMT400048242	Potato	extracellular	46.25	26.52
PGSC0003DMT400055138	Potato	extracellular	48.12	26.1
PGSC0003DMT400028324	Potato	vacuole	47.5	25.76
PGSC0003DMT400036329	Potato	extracellular	43.75	24.82
PGSC0003DMT400026398	Potato	extracellular	43.75	24.73
PGSC0003DMT400005591	Potato	extracellular	45.62	24.66
PGSC0003DMT400048241	Potato	extracellular	43.12	24.21
PGSC0003DMT400020122	Potato	extracellular	43.75	24.14
PGSC0003DMT400020314	Potato	cytosol, nucleus, peroxisome	41.25	24.09
PGSC0003DMT400044562	Potato	extracellular	43.12	24.04
PGSC0003DMT400079856	Potato	extracellular	43.12	24.04
PGSC0003DMT400063689	Potato	vacuole	44.38	23.99
PGSC0003DMT400005342	Potato	extracellular	44.38	23.83
PGSC0003DMT400038413	Potato	extracellular	41.88	23.43
PGSC0003DMT400061841	Potato	extracellular	43.12	23.39
PGSC0003DMT400056316	Potato	extracellular	40.0	23.19
PGSC0003DMT400067358	Potato	extracellular	42.5	22.97
PGSC0003DMT400011902	Potato	extracellular	39.38	22.58
PGSC0003DMT400044559	Potato	extracellular	40.0	22.07
PGSC0003DMT400048240	Potato	golgi	43.12	20.18
PGSC0003DMT400005949	Potato	cytosol	21.25	17.53

Protein Annotations

Gene3D:2.60.120.200	MapMan:50.2.4	InterPro:Beta_glucanase	InterPro:ConA-like_dom_sf	InterPro:GH16	InterPro:GH16_AS
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	InterPro:IPR000757	UniProt:M1A2C4	PFAM:PF00722	EnsemblPlantsGene:PGSC0003DMG400005127	PGSC:PGSC0003DMG400005127
EnsemblPlants:PGSC0003DMT400013128	PRINTS:PR00737	ScanProsite:PS01034	PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF37
SUPFAM:SSF49899	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002963A31	:	:

Description

Xyloglucan endotransglucosylase/hydrolase protein A [Source:PGSC_GENE;Acc:PGSC0003DMG400005127]

Coordinates

chr1:-:83258134..83258808

Molecular Weight (calculated)

18399.7 Da

IEP (calculated)

5.121

GRAVY (calculated)

-0.177

Length

160 amino acids

Sequence
(BLAST)

001: MNHFPRFIFL ATFLIYLSHI ALASIVSTGD YNKDFYVTYS PSHINTSVDG RTRNLIFDKE SGTEIATKDM YLFGQFDMKI KLIPGNSAGT VVAFYLASGQ
101: PNRDEVDFEF LGNVAGKPYT LQTNVYVDGF DDREQRINLW FDPTQDYHTY SILWNLHQIV

Best Arabidopsis Sequence Match ( AT1G11545.1 )
(BLAST)

001: METERRIITS CSAMTALFLF MTALMASSSI AATPTQSFED NFNIMWSENH FTTSDDGEIW NLSLDNDTGC GFQTKHMYRF GWFSMKLKLV GGDSAGVVTA
101: YYMCSENGAG PERDEIDFEF LGNRTGQPYI IQTNVYKNGT GNREMRHSLW FDPTKDYHTY SILWNNHQLV FFVDRVPIRV YKNSDKVPNN DFFPNQKPMY
201: LFSSIWNADD WATRGGLEKT DWKKAPFVSS YKDFAVEGCR WKDPFPACVS TTTENWWDQY DAWHLSKTQK MDYAWVQRNL VVYDYCKDSE RFPTLPWECS
301: ISPWA

Arabidopsis Description

XTH8Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178W0W2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.