Factsheet for PGSC0003DMT400036329

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	cytosol, extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

extracellular: 22313117
extracellular: 24773703

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

msms PMID: 24773703 doi

T Bengtsson, D Weighill, E Proux-Wéra, F Levander, S Resjö, DD Burra, LI Moushib, PE Hedley, E Liljeroth, D Jacobson, E Alexandersson, E Andreasson

Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Box 102, SE-230 53 Alnarp, Sweden. erik.alexandersson@slu.se.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g046290.2.1	Tomato	extracellular	95.04	93.06
KRH19136	Soybean	nucleus	75.18	74.91
KRH37378	Soybean	nucleus	69.5	73.68
PGSC0003DMT400038413	Potato	extracellular	69.5	68.53
AT4G25810.1	Thale cress	extracellular	68.79	67.83
VIT_11s0052g01250.t01	Wine grape	extracellular	69.15	67.47
Bra013922.1-P	Field mustard	extracellular	68.44	67.25
CDX89393	Canola	extracellular	68.44	67.25
Bra008806.1-P	Field mustard	extracellular	68.44	67.25
PGSC0003DMT400048241	Potato	extracellular	67.73	67.02
CDX94413	Canola	extracellular	68.09	66.9
Bra002719.1-P	Field mustard	extracellular	66.67	66.43
CDY39193	Canola	extracellular	63.48	65.81
CDY59999	Canola	extracellular	57.45	65.59
AT4G30270.1	Thale cress	extracellular	62.41	65.43
CDY67487	Canola	extracellular	60.28	65.38
CDY25903	Canola	extracellular	60.28	65.38
Bra024089.1-P	Field mustard	extracellular	64.54	65.23
CDY66832	Canola	extracellular	62.41	64.94
CDY14905	Canola	extracellular	62.06	64.58
Bra020433.1-P	Field mustard	extracellular	59.22	64.23
CDX72228	Canola	extracellular	63.48	64.16
PGSC0003DMT400056316	Potato	extracellular	62.77	64.13
CDY28174	Canola	extracellular	63.48	63.48
Bra011179.1-P	Field mustard	extracellular	63.48	63.48
AT5G57560.1	Thale cress	extracellular	63.83	63.38
CDX68640	Canola	extracellular	63.12	63.12
PGSC0003DMT400048242	Potato	extracellular	62.41	63.08
KRH12375	Soybean	extracellular	70.57	62.97
PGSC0003DMT400011902	Potato	extracellular	61.7	62.37
CDX72227	Canola	extracellular	59.57	61.99
PGSC0003DMT400020314	Potato	cytosol, nucleus, peroxisome	57.09	58.76
PGSC0003DMT400044562	Potato	extracellular	58.51	57.49
PGSC0003DMT400079856	Potato	extracellular	58.16	57.14
CDY03539	Canola	endoplasmic reticulum, extracellular	62.41	56.41
PGSC0003DMT400020122	Potato	extracellular	57.45	55.86
CDY02741	Canola	extracellular	58.16	55.78
PGSC0003DMT400044559	Potato	extracellular	57.09	55.52
PGSC0003DMT400005949	Potato	cytosol	37.94	55.15
PGSC0003DMT400026398	Potato	extracellular	48.58	48.41
PGSC0003DMT400048240	Potato	golgi	58.51	48.25
PGSC0003DMT400028324	Potato	vacuole	50.0	47.8
PGSC0003DMT400005591	Potato	extracellular	49.65	47.3
PGSC0003DMT400055138	Potato	extracellular	48.23	46.1
PGSC0003DMT400063689	Potato	vacuole	47.52	45.27
PGSC0003DMT400061841	Potato	extracellular	46.45	44.41
PGSC0003DMT400013128	Potato	extracellular	24.82	43.75
PGSC0003DMT400067358	Potato	extracellular	45.74	43.58
PGSC0003DMT400005342	Potato	extracellular	44.68	42.28

Protein Annotations

EntrezGene:102591177	Gene3D:2.60.120.200	MapMan:50.2.4	InterPro:Beta_glucanase	InterPro:ConA-like_dom_sf	InterPro:GH16
InterPro:GH16_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576
GO:GO:0005618	GO:GO:0005623	GO:GO:0005975	GO:GO:0006073	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010411	GO:GO:0016043	GO:GO:0016740	GO:GO:0016762	GO:GO:0016787
GO:GO:0016798	GO:GO:0030312	GO:GO:0042546	GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757
UniProt:M1B3H5	PFAM:PF00722	PFAM:PF06955	EnsemblPlantsGene:PGSC0003DMG400013975	PGSC:PGSC0003DMG400013975	EnsemblPlants:PGSC0003DMT400036329
PIRSF:PIRSF005604	PRINTS:PR00737	ScanProsite:PS01034	PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF100
SUPFAM:SSF49899	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000295D7F9	InterPro:XET_C	RefSeq:XP_006360667.1
InterPro:XTH	SEG:seg	:	:	:	:

Description

Xyloglucan endotransglycosylase/hydrolase XTH-6 [Source:PGSC_GENE;Acc:PGSC0003DMG400013975]

Coordinates

chr5:+:42894347..42898619

Molecular Weight (calculated)

32086.8 Da

IEP (calculated)

6.766

GRAVY (calculated)

-0.271

Length

282 amino acids

Sequence
(BLAST)

001: MKITFLFFLI LSFLFLVVAL AGNFNQDFDI TWGDGRAKIL ENGQLMTLSL DKASGSGFRS KNQYLFGKID LKIKLVPGNS AGTVTTYYLS SIGSSHDEID
101: FEFLGNLSGD PYILHTNVFT QGKGDREQQF YLWFDPTKDF HTYSILWNPQ SIIFSVDGTP IRQFKNMESS GIPYPKSQPM WIYSSLWNAD DWATRGGLVK
201: TDWTKAPFIA SYTNFNAQAC VWSSTSTASS CNSTTQNSWL SENLDITGQS RIKWVQNNYM IYNYCNDIKR FPQGFPRECS LN

Best Arabidopsis Sequence Match ( AT4G25810.1 )
(BLAST)

001: MAMISYSTIV VALLASFMIC SVSANFQRDV EITWGDGRGQ ITNNGDLLTL SLDKASGSGF QSKNEYLFGK IDMQIKLVAG NSAGTVTAYY LKSPGSTWDE
101: IDFEFLGNLS GDPYTLHTNV FTQGKGDREQ QFKLWFDPTS DFHTYSILWN PQRIIFSVDG TPIREFKNME SQGTLFPKNQ PMRMYSSLWN AEEWATRGGL
201: VKTDWSKAPF TASYRGFNEE ACVVINGQSS CPNVSGQGST GSWLSQELDS TGQEQMRWVQ NNYMIYNYCT DAKRFPQGLP RECLAA

Arabidopsis Description

XTH23Probable xyloglucan endotransglucosylase/hydrolase protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q38910]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.