Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 8
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25903 | Canola | extracellular | 84.51 | 92.31 |
| Bra002719.1-P | Field mustard | extracellular | 91.9 | 92.23 |
| AT4G25810.1 | Thale cress | extracellular | 81.69 | 81.12 |
| AT4G30270.1 | Thale cress | extracellular | 69.37 | 73.23 |
| KRH19136 | Soybean | nucleus | 68.31 | 68.55 |
| VIT_11s0052g01220.t01 | Wine grape | extracellular | 67.61 | 67.37 |
| AT5G57550.1 | Thale cress | extracellular | 65.14 | 65.14 |
| KRH37378 | Soybean | nucleus | 60.92 | 65.04 |
| PGSC0003DMT400036329 | Potato | extracellular | 63.38 | 63.83 |
| VIT_11s0052g01250.t01 | Wine grape | extracellular | 64.08 | 62.98 |
| Solyc05g046290.2.1 | Tomato | extracellular | 63.03 | 62.15 |
| Solyc07g009380.2.1 | Tomato | extracellular, nucleus | 59.86 | 61.82 |
| AT2G18800.1 | Thale cress | extracellular | 64.44 | 60.0 |
| AT4G25820.1 | Thale cress | extracellular | 59.15 | 58.54 |
| AT5G57540.1 | Thale cress | extracellular | 58.45 | 58.45 |
| AT4G14130.1 | Thale cress | extracellular | 59.15 | 58.13 |
| AT5G57530.1 | Thale cress | extracellular | 57.39 | 57.19 |
| AT3G23730.1 | Thale cress | extracellular, vacuole | 58.45 | 57.04 |
| KRH12375 | Soybean | extracellular | 60.92 | 54.75 |
| AT5G13870.2 | Thale cress | extracellular, vacuole | 48.59 | 47.1 |
| AT2G06850.1 | Thale cress | extracellular | 47.54 | 45.61 |
| AT4G03210.1 | Thale cress | extracellular | 46.48 | 45.52 |
| AT5G65730.1 | Thale cress | extracellular | 46.48 | 45.21 |
| AT4G28850.1 | Thale cress | extracellular | 46.48 | 45.21 |
| AT4G37800.1 | Thale cress | extracellular, vacuole | 45.42 | 44.03 |
| AT1G11545.1 | Thale cress | extracellular | 45.07 | 41.97 |
| AT2G14620.1 | Thale cress | vacuole | 40.14 | 38.13 |
Protein Annotations
| Gene3D:2.60.120.200 | MapMan:50.2.4 | EntrezGene:835860 | UniProt:A0A178UQX4 | ProteinID:AAA92363.1 | ProteinID:AED96915.1 |
| EMBL:AF051338 | EMBL:AF083792 | EMBL:AF367262 | EMBL:AF446881 | ArrayExpress:AT5G57560 | EnsemblPlantsGene:AT5G57560 |
| RefSeq:AT5G57560 | TAIR:AT5G57560 | RefSeq:AT5G57560-TAIR-G | EnsemblPlants:AT5G57560.1 | TAIR:AT5G57560.1 | EMBL:AY052712 |
| EMBL:AY055102 | ProteinID:BAB08791.1 | InterPro:Beta_glucanase | InterPro:ConA-like_dom_sf | InterPro:GH16 | InterPro:GH16_AS |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005618 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005975 | GO:GO:0006073 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009408 | GO:GO:0009409 | GO:GO:0009605 |
| GO:GO:0009612 | GO:GO:0009628 | GO:GO:0009664 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009741 |
| GO:GO:0009987 | GO:GO:0010411 | GO:GO:0016043 | GO:GO:0016740 | GO:GO:0016762 | GO:GO:0016787 |
| GO:GO:0016798 | GO:GO:0030312 | GO:GO:0042546 | GO:GO:0048046 | GO:GO:0071555 | InterPro:IPR000757 |
| RefSeq:NP_200564.1 | ProteinID:OAO96053.1 | PFAM:PF00722 | PFAM:PF06955 | PIRSF:PIRSF005604 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020003 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PRINTS:PR00737 | ScanProsite:PS01034 | PFscan:PS51762 | PANTHER:PTHR31062 | PANTHER:PTHR31062:SF20 | UniProt:Q38857 |
| SUPFAM:SSF49899 | SignalP:SignalP-noTM | Symbol:TCH4 | UniParc:UPI0000052A3D | InterPro:XET_C | InterPro:XTH |
Description
XTH22Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178UQX4]
Coordinates
chr5:-:23307006..23308680
Molecular Weight (calculated)
32094.9 Da
IEP (calculated)
8.807
GRAVY (calculated)
-0.489
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MAITYLLPLF LSLIITSSVS ANFQRDVEIT WGDGRGQIKN NGELLTLSLD KSSGSGFQSK NEYLFGKVSM QMKLVPGNSA GTVTTLYLKS PGTTWDEIDF
101: EFLGNSSGEP YTLHTNVYTQ GKGDKEQQFK LWFDPTANFH TYTILWNPQR IIFTVDGTPI REFKNMESLG TLFPKNKPMR MYSSLWNADD WATRGGLVKT
201: DWSKAPFTAS YRGFQQEACV WSNGKSSCPN ASKQGTTTGS WLSQELDSTA QQRMRWVQRN YMIYNYCTDA KRFPQGLPKE CLAA
101: EFLGNSSGEP YTLHTNVYTQ GKGDKEQQFK LWFDPTANFH TYTILWNPQR IIFTVDGTPI REFKNMESLG TLFPKNKPMR MYSSLWNADD WATRGGLVKT
201: DWSKAPFTAS YRGFQQEACV WSNGKSSCPN ASKQGTTTGS WLSQELDSTA QQRMRWVQRN YMIYNYCTDA KRFPQGLPKE CLAA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.