Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 8
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88627 | Canola | extracellular | 93.68 | 93.36 |
| CDY11863 | Canola | extracellular | 93.68 | 93.36 |
| AT5G57540.1 | Thale cress | extracellular | 92.63 | 92.96 |
| CDY67779 | Canola | extracellular | 92.28 | 91.96 |
| Bra002723.1-P | Field mustard | extracellular | 92.28 | 91.96 |
| CDY67488 | Canola | extracellular | 90.18 | 90.81 |
| Bra020436.1-P | Field mustard | extracellular | 89.82 | 90.46 |
| CDY02738 | Canola | extracellular, nucleus, vacuole | 64.21 | 85.12 |
| Bra006814.1-P | Field mustard | extracellular | 92.63 | 82.76 |
| AT4G25820.1 | Thale cress | extracellular | 79.3 | 78.75 |
| GSMUA_Achr10P... | Banana | cytosol | 50.53 | 72.36 |
| GSMUA_Achr4P02240_001 | Banana | cytosol, mitochondrion, nucleus | 47.37 | 69.95 |
| GSMUA_Achr3P05220_001 | Banana | cytosol | 49.12 | 67.31 |
| GSMUA_Achr9P13820_001 | Banana | cytosol | 49.12 | 66.99 |
| GSMUA_Achr5P21880_001 | Banana | cytosol | 49.12 | 65.73 |
| GSMUA_Achr7P16430_001 | Banana | cytosol | 48.07 | 64.32 |
| Os06t0697000-02 | Rice | extracellular | 62.81 | 61.72 |
| GSMUA_Achr3P05200_001 | Banana | cytosol, plastid, vacuole | 42.46 | 61.42 |
| HORVU7Hr1G098320.3 | Barley | vacuole | 61.75 | 60.9 |
| TraesCS7D01G418700.1 | Wheat | cytosol, mitochondrion, nucleus | 47.37 | 60.54 |
| VIT_11s0052g01230.t01 | Wine grape | cytosol | 58.95 | 60.43 |
| TraesCS7D01G419300.1 | Wheat | extracellular | 61.4 | 60.34 |
| HORVU0Hr1G022110.1 | Barley | extracellular, vacuole | 61.75 | 60.27 |
| TraesCS7A01G426900.1 | Wheat | extracellular | 60.35 | 60.14 |
| TraesCS7A01G427000.1 | Wheat | extracellular | 60.35 | 60.14 |
| TraesCS7A01G426100.1 | Wheat | vacuole | 60.7 | 59.86 |
| AT5G57550.1 | Thale cress | extracellular | 59.65 | 59.86 |
| AT4G30270.1 | Thale cress | extracellular | 56.49 | 59.85 |
| AT4G25810.1 | Thale cress | extracellular | 60.0 | 59.79 |
| TraesCS7D01G419200.1 | Wheat | extracellular | 60.0 | 59.79 |
| TraesCS7D01G419100.1 | Wheat | extracellular | 60.35 | 59.72 |
| TraesCS7A01G426600.1 | Wheat | vacuole | 60.35 | 59.31 |
| TraesCS7B01G327000.1 | Wheat | extracellular | 60.7 | 59.25 |
| HORVU7Hr1G098260.1 | Barley | vacuole | 60.7 | 59.25 |
| TraesCS7B01G326900.1 | Wheat | extracellular | 60.0 | 59.17 |
| TraesCS7B01G327200.1 | Wheat | extracellular | 59.3 | 59.09 |
| TraesCS7A01G426700.1 | Wheat | extracellular | 59.65 | 58.82 |
| PGSC0003DMT400048242 | Potato | extracellular | 57.19 | 58.42 |
| EER90303 | Sorghum | extracellular, golgi, vacuole | 60.7 | 57.48 |
| Solyc07g006870.2.1 | Tomato | extracellular, vacuole | 56.84 | 57.45 |
| AT5G57560.1 | Thale cress | extracellular | 57.19 | 57.39 |
| Zm00001d014617_P001 | Maize | extracellular | 59.65 | 57.05 |
| EER88885 | Sorghum | extracellular | 58.25 | 56.85 |
| AT4G14130.1 | Thale cress | extracellular | 57.54 | 56.75 |
| AT3G23730.1 | Thale cress | extracellular, vacuole | 57.89 | 56.7 |
| TraesCS7D01G419900.1 | Wheat | extracellular | 56.84 | 56.45 |
| TraesCS7A01G427600.1 | Wheat | extracellular | 56.84 | 56.06 |
| Os06t0696400-01 | Rice | extracellular | 57.54 | 55.97 |
| HORVU7Hr1G098440.2 | Barley | extracellular | 56.14 | 55.94 |
| TraesCS7B01G327700.1 | Wheat | extracellular | 56.84 | 55.86 |
| Zm00001d014613_P001 | Maize | plasma membrane | 55.09 | 54.14 |
| TraesCS7D01G418600.1 | Wheat | vacuole | 60.0 | 53.6 |
| Zm00001d009309_P001 | Maize | extracellular, vacuole | 51.93 | 53.43 |
| AT2G18800.1 | Thale cress | extracellular | 55.79 | 52.13 |
| AT5G13870.2 | Thale cress | extracellular, vacuole | 49.82 | 48.46 |
| AT4G28850.1 | Thale cress | extracellular | 48.07 | 46.92 |
| AT2G06850.1 | Thale cress | extracellular | 48.07 | 46.28 |
| AT5G65730.1 | Thale cress | extracellular | 45.61 | 44.52 |
| AT4G37800.1 | Thale cress | extracellular, vacuole | 45.61 | 44.37 |
| HORVU7Hr1G098280.1 | Barley | extracellular, mitochondrion, vacuole | 61.05 | 43.5 |
| AT4G03210.1 | Thale cress | extracellular | 43.51 | 42.76 |
| AT2G14620.1 | Thale cress | vacuole | 44.56 | 42.47 |
| AT1G11545.1 | Thale cress | extracellular | 44.91 | 41.97 |
Protein Annotations
| Gene3D:2.60.120.200 | MapMan:50.2.4 | EntrezGene:835857 | UniProt:A0A178UMJ6 | ProteinID:AED96911.1 | ArrayExpress:AT5G57530 |
| EnsemblPlantsGene:AT5G57530 | RefSeq:AT5G57530 | TAIR:AT5G57530 | RefSeq:AT5G57530-TAIR-G | EnsemblPlants:AT5G57530.1 | TAIR:AT5G57530.1 |
| EMBL:AY057625 | EMBL:AY113025 | Unigene:At.26243 | ProteinID:BAB08788.1 | InterPro:ConA-like_dom_sf | InterPro:GH16 |
| InterPro:GH16_AS | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005575 | GO:GO:0005576 |
| GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005975 | GO:GO:0006073 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010411 | GO:GO:0016043 | GO:GO:0016740 |
| GO:GO:0016762 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0030312 | GO:GO:0042546 | GO:GO:0048046 |
| GO:GO:0071555 | InterPro:IPR000757 | RefSeq:NP_200561.1 | ProteinID:OAO93891.1 | PFAM:PF00722 | PFAM:PF06955 |
| PIRSF:PIRSF005604 | PO:PO:0000256 | PO:PO:0000262 | PO:PO:0009005 | ScanProsite:PS01034 | PFscan:PS51762 |
| PANTHER:PTHR31062 | PANTHER:PTHR31062:SF20 | UniProt:Q9FKL9 | SUPFAM:SSF49899 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI0000048C8E | InterPro:XET_C | InterPro:XTH | Symbol:XTH12 | SEG:seg | : |
Description
XTH12Probable xyloglucan endotransglucosylase/hydrolase protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKL9]
Coordinates
chr5:-:23300321..23301689
Molecular Weight (calculated)
32192.0 Da
IEP (calculated)
5.822
GRAVY (calculated)
-0.234
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAFATKQSP LLLASLLILI GVATGSFYDS FDITWGAGRA NIFESGQLLT CTLDKTSGSG FQSKKEYLFG KIDMKIKLVP GNSAGTVTAY YLSSKGETWD
101: EIDFEFLGNV TGQPYVIHTN VFTGGKGNRE MQFYLWFDPT ADFHTYTVLW NPLNIIFLVD GIPIRVFKNN EANGVAYPKS QPMKIYSSLW EADDWATQGG
201: KVKTDWTNAP FSASYRSFND VDCCSRTSIW NWVTCNANSN SWMWTTLNSN QLGQLKWVQK DYMIYNYCTD FKRFPQGLPT ECNLN
101: EIDFEFLGNV TGQPYVIHTN VFTGGKGNRE MQFYLWFDPT ADFHTYTVLW NPLNIIFLVD GIPIRVFKNN EANGVAYPKS QPMKIYSSLW EADDWATQGG
201: KVKTDWTNAP FSASYRSFND VDCCSRTSIW NWVTCNANSN SWMWTTLNSN QLGQLKWVQK DYMIYNYCTD FKRFPQGLPT ECNLN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.