Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 8
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39193 | Canola | extracellular | 89.59 | 88.6 |
| CDY14905 | Canola | extracellular | 89.22 | 88.56 |
| CDY66832 | Canola | extracellular | 89.22 | 88.56 |
| Bra011179.1-P | Field mustard | extracellular | 91.82 | 87.59 |
| CDY28174 | Canola | extracellular | 91.82 | 87.59 |
| CDX72228 | Canola | extracellular | 90.71 | 87.46 |
| CDX68640 | Canola | extracellular | 91.45 | 87.23 |
| Bra024089.1-P | Field mustard | extracellular | 89.96 | 86.74 |
| CDX72227 | Canola | extracellular | 83.64 | 83.03 |
| CDY03539 | Canola | endoplasmic reticulum, extracellular | 89.22 | 76.92 |
| AT5G57560.1 | Thale cress | extracellular | 73.23 | 69.37 |
| KRH37378 | Soybean | nucleus | 65.43 | 66.17 |
| AT4G25810.1 | Thale cress | extracellular | 70.26 | 66.08 |
| KRH19136 | Soybean | nucleus | 68.77 | 65.37 |
| VIT_11s0052g01220.t01 | Wine grape | extracellular | 68.77 | 64.91 |
| Solyc07g009380.2.1 | Tomato | extracellular, nucleus | 63.94 | 62.55 |
| PGSC0003DMT400036329 | Potato | extracellular | 65.43 | 62.41 |
| AT5G57550.1 | Thale cress | extracellular | 65.43 | 61.97 |
| VIT_11s0052g01250.t01 | Wine grape | extracellular | 66.17 | 61.59 |
| Solyc05g046290.2.1 | Tomato | extracellular | 64.31 | 60.07 |
| AT2G18800.1 | Thale cress | extracellular | 65.8 | 58.03 |
| AT4G14130.1 | Thale cress | extracellular | 61.34 | 57.09 |
| AT5G57530.1 | Thale cress | extracellular | 59.85 | 56.49 |
| AT4G25820.1 | Thale cress | extracellular | 60.22 | 56.45 |
| KRH12375 | Soybean | extracellular | 65.8 | 56.01 |
| AT5G57540.1 | Thale cress | extracellular | 59.11 | 55.99 |
| AT3G23730.1 | Thale cress | extracellular, vacuole | 60.22 | 55.67 |
| AT5G13870.2 | Thale cress | extracellular, vacuole | 51.67 | 47.44 |
| AT2G06850.1 | Thale cress | extracellular | 49.81 | 45.27 |
| AT4G28850.1 | Thale cress | extracellular | 48.33 | 44.52 |
| AT4G03210.1 | Thale cress | extracellular | 47.21 | 43.79 |
| AT5G65730.1 | Thale cress | extracellular | 46.47 | 42.81 |
| AT4G37800.1 | Thale cress | extracellular, vacuole | 45.72 | 41.98 |
| AT2G14620.1 | Thale cress | vacuole | 44.98 | 40.47 |
| AT1G11545.1 | Thale cress | extracellular | 44.24 | 39.02 |
Protein Annotations
| Gene3D:2.60.120.200 | MapMan:50.2.4 | EntrezGene:829150 | UniProt:A0A178UVM1 | ProteinID:AAA32828.1 | ProteinID:AEE85745.1 |
| EMBL:AF035384 | EMBL:AK229363 | EMBL:AK230296 | ArrayExpress:AT4G30270 | EnsemblPlantsGene:AT4G30270 | RefSeq:AT4G30270 |
| TAIR:AT4G30270 | RefSeq:AT4G30270-TAIR-G | EnsemblPlants:AT4G30270.1 | TAIR:AT4G30270.1 | EMBL:AY035156 | EMBL:AY063027 |
| EMBL:AY085867 | Unigene:At.20967 | ProteinID:CAA58001.1 | ProteinID:CAB52471.1 | ProteinID:CAB81020.1 | InterPro:ConA-like_dom_sf |
| EMBL:D63508 | InterPro:GH16 | InterPro:GH16_AS | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 |
| GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0005886 | GO:GO:0005975 | GO:GO:0006073 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009505 | GO:GO:0009828 | GO:GO:0009987 | GO:GO:0010411 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0016740 | GO:GO:0016762 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0030312 | GO:GO:0042546 |
| GO:GO:0048046 | GO:GO:0071555 | GO:GO:0071669 | InterPro:IPR000757 | Symbol:MERI5B | RefSeq:NP_194756.1 |
| ProteinID:OAO97663.1 | UniProt:P24806 | PFAM:PF00722 | PFAM:PF06955 | PIRSF:PIRSF005604 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000017 | PO:PO:0000034 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020121 | PO:PO:0020137 | PO:PO:0020144 | PO:PO:0025022 | PO:PO:0025281 |
| ScanProsite:PS01034 | PFscan:PS51762 | PANTHER:PTHR31062 | PANTHER:PTHR31062:SF20 | UniProt:Q0WLB0 | SUPFAM:SSF49899 |
| SignalP:SignalP-noTM | UniParc:UPI0000048A24 | InterPro:XET_C | InterPro:XTH | EMBL:Z17602 | : |
Description
XTH24Xyloglucan endotransglucosylase/hydrolase protein 24 [Source:UniProtKB/Swiss-Prot;Acc:P24806]
Coordinates
chr4:-:14819192..14820595
Molecular Weight (calculated)
30757.2 Da
IEP (calculated)
8.575
GRAVY (calculated)
-0.493
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPFKIFFFT TLLVAAFSVS AADFNTDVNV AWGNGRGKIL NNGQLLTLSL DKSSGSGFQS KTEYLFGKID MQIKLVPGNS AGTVTTFYLK SEGSTWDEID
101: FEFLGNMSGD PYTLHTNVYT QGKGDKEQQF HLWFDPTANF HTYSILWNPQ RIILTVDDTP IREFKNYESL GVLFPKNKPM RMYASLWNAD DWATRGGLVK
201: TDWSKAPFMA SYRNIKIDSK PNSNWYTQEM DSTSQARLKW VQKNYMIYNY CTDHRRFPQG APKECTTSS
101: FEFLGNMSGD PYTLHTNVYT QGKGDKEQQF HLWFDPTANF HTYSILWNPQ RIILTVDDTP IREFKNYESL GVLFPKNKPM RMYASLWNAD DWATRGGLVK
201: TDWSKAPFMA SYRNIKIDSK PNSNWYTQEM DSTSQARLKW VQKNYMIYNY CTDHRRFPQG APKECTTSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.