CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39193	Canola	extracellular	95.7	98.16
CDY66832	Canola	extracellular	89.25	91.88
CDY14905	Canola	extracellular	88.53	91.14
CDY28174	Canola	extracellular	92.11	91.13
AT4G30270.1	Thale cress	extracellular	87.46	90.71
CDX68640	Canola	extracellular	91.4	90.43
CDX72227	Canola	extracellular	83.51	85.98
CDY03539	Canola	endoplasmic reticulum, extracellular	89.25	79.81
CDY59999	Canola	extracellular	64.52	72.87
CDY67487	Canola	extracellular	66.31	71.15
CDY25903	Canola	extracellular	66.31	71.15
CDX89393	Canola	extracellular	70.97	68.99
CDX94413	Canola	extracellular	70.61	68.64
KRH37378	Soybean	nucleus	62.01	65.04
KRH19136	Soybean	nucleus	65.95	65.02
VIT_11s0052g01220.t01	Wine grape	extracellular	65.95	64.56
PGSC0003DMT400036329	Potato	extracellular	64.16	63.48
VIT_11s0052g01250.t01	Wine grape	extracellular	65.59	63.32
CDY25904	Canola	extracellular	63.08	61.97
Solyc07g009380.2.1	Tomato	extracellular, nucleus	60.93	61.82
CDY67778	Canola	extracellular	62.72	61.62
CDY02741	Canola	extracellular	64.52	61.22
Solyc05g046290.2.1	Tomato	extracellular	62.72	60.76
CDY27126	Canola	extracellular	60.93	58.82
CDY61576	Canola	vacuole	58.42	58.21
CDY59998	Canola	extracellular	57.71	56.89
CDY49308	Canola	extracellular	63.44	56.37
CDY67779	Canola	extracellular	57.71	56.29
CDY02738	Canola	extracellular, nucleus, vacuole	43.37	56.28
KRH12375	Soybean	extracellular	63.44	56.01
CDY67488	Canola	extracellular	56.63	55.83
CDX88627	Canola	extracellular	56.99	55.59
CDY11863	Canola	extracellular	56.63	55.24
CDY69806	Canola	extracellular	55.56	54.58
CDY50186	Canola	extracellular	55.2	53.85
CDX92733	Canola	extracellular	54.84	53.5
CDY13000	Canola	endoplasmic reticulum, extracellular, nucleus	62.37	53.21
CDY12366	Canola	extracellular	51.97	51.06
CDX78542	Canola	vacuole	51.97	48.66
CDX69621	Canola	vacuole	50.9	48.46
CDY09832	Canola	vacuole	50.9	48.46
CDX70524	Canola	vacuole	51.61	48.32
CDX93096	Canola	extracellular	48.75	46.1
CDY45623	Canola	extracellular	46.95	45.96
CDY08756	Canola	extracellular	46.95	45.96
CDY69237	Canola	extracellular	48.39	45.76
CDY53771	Canola	extracellular	46.59	44.83
CDX90896	Canola	extracellular	46.59	44.83
CDY22110	Canola	extracellular	46.59	44.83
CDY21985	Canola	extracellular	46.59	44.83
CDY35228	Canola	extracellular	45.88	43.84
CDY06861	Canola	extracellular	45.52	43.49
CDX72656	Canola	extracellular, vacuole	45.16	43.15
CDY31620	Canola	extracellular, vacuole	44.8	42.66
CDY49788	Canola	extracellular	43.73	40.8
CDX97967	Canola	extracellular	43.37	40.47
CDX71167	Canola	vacuole	41.94	39.39

Protein Annotations

KEGG:00500+2.4.1.20	Gene3D:2.60.120.200	MapMan:50.2.4	GO:A0A078CB44	EnsemblPlants:CDX72228	ProteinID:CDX72228
ProteinID:CDX72228.1	InterPro:ConA-like_dom_sf	InterPro:GH16	InterPro:GH16_AS	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975
GO:GO:0006073	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010411	GO:GO:0016043
GO:GO:0016740	GO:GO:0016762	GO:GO:0016787	GO:GO:0016798	GO:GO:0030312	GO:GO:0042546
GO:GO:0048046	GO:GO:0071555	EnsemblPlantsGene:GSBRNA2T00099688001	InterPro:IPR000757	PFAM:PF00722	PFAM:PF06955
PIRSF:PIRSF005604	ScanProsite:PS01034	PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF20	SUPFAM:SSF49899
SignalP:SignalP-noTM	UniParc:UPI0004EEE582	InterPro:XET_C	InterPro:XTH	SEG:seg	:

Description

BnaC07g42500D

Coordinates

chrLK031796:-:91886..93292

Molecular Weight (calculated)

31596.3 Da

IEP (calculated)

8.801

GRAVY (calculated)

-0.379

Length

279 amino acids

Sequence
(BLAST)

001: MSPFKIFFFA ALLAAVFSFS AADFNSDVNV AWGNGRGKIL NNGQLLTLSL DRSSGSGFQS KTEYLFGKID MQIKLVPGNS AGTVTTFYLK SEGSTWDEID
101: FEFLGNMSGD PYTLHTNVYT QGKGDKEQQF YLWFDPTANF HTYSILWNPQ RIILTVDDTP IREFKNSESI GVLFPKSKPM RMYASLWNAD DWATRGGLVK
201: TDWSKAPFMA AYRNIKIDGC AHINGRSSCS PSSSWYTQQM DATSQARLRW VQKNYMIYNY CTDRKRFPQG IPRECATSA

Best Arabidopsis Sequence Match ( AT4G30270.1 )
(BLAST)

001: MSPFKIFFFT TLLVAAFSVS AADFNTDVNV AWGNGRGKIL NNGQLLTLSL DKSSGSGFQS KTEYLFGKID MQIKLVPGNS AGTVTTFYLK SEGSTWDEID
101: FEFLGNMSGD PYTLHTNVYT QGKGDKEQQF HLWFDPTANF HTYSILWNPQ RIILTVDDTP IREFKNYESL GVLFPKNKPM RMYASLWNAD DWATRGGLVK
201: TDWSKAPFMA SYRNIKIDSK PNSNWYTQEM DSTSQARLKW VQKNYMIYNY CTDHRRFPQG APKECTTSS

Arabidopsis Description

XTH24Xyloglucan endotransglucosylase/hydrolase protein 24 [Source:UniProtKB/Swiss-Prot;Acc:P24806]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.