CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011179.1-P	Field mustard	extracellular	98.94	98.94
CDY28174	Canola	extracellular	98.94	98.94
CDY14905	Canola	extracellular	90.78	94.46
CDY66832	Canola	extracellular	89.36	92.99
AT4G30270.1	Thale cress	extracellular	87.23	91.45
CDX72228	Canola	extracellular	90.43	91.4
CDY39193	Canola	extracellular	87.23	90.44
CDX72227	Canola	extracellular	79.43	82.66
CDY03539	Canola	endoplasmic reticulum, extracellular	89.36	80.77
CDY59999	Canola	extracellular	63.83	72.87
CDY67487	Canola	extracellular	65.6	71.15
CDY25903	Canola	extracellular	65.6	71.15
CDX89393	Canola	extracellular	71.63	70.38
CDX94413	Canola	extracellular	71.28	70.03
VIT_11s0052g01220.t01	Wine grape	extracellular	67.73	67.02
KRH19136	Soybean	nucleus	66.67	66.43
VIT_11s0052g01250.t01	Wine grape	extracellular	66.67	65.05
KRH37378	Soybean	nucleus	60.64	64.29
PGSC0003DMT400036329	Potato	extracellular	63.12	63.12
CDY25904	Canola	extracellular	63.48	63.03
CDY67778	Canola	extracellular	63.12	62.68
Solyc07g009380.2.1	Tomato	extracellular, nucleus	60.99	62.55
CDY02741	Canola	extracellular	64.54	61.9
Solyc05g046290.2.1	Tomato	extracellular	62.41	61.11
CDY27126	Canola	extracellular	60.28	58.82
CDY59998	Canola	extracellular	58.87	58.66
CDY61576	Canola	vacuole	57.8	58.21
CDY49308	Canola	extracellular	64.18	57.64
CDY67779	Canola	extracellular	58.16	57.34
CDX88627	Canola	extracellular	57.8	56.99
CDY67488	Canola	extracellular	57.09	56.89
CDY69806	Canola	extracellular	57.09	56.69
CDY11863	Canola	extracellular	57.45	56.64
CDY02738	Canola	extracellular, nucleus, vacuole	42.55	55.81
KRH12375	Soybean	extracellular	62.06	55.38
CDY50186	Canola	extracellular	56.03	55.24
CDX92733	Canola	extracellular	55.67	54.9
CDY13000	Canola	endoplasmic reticulum, extracellular, nucleus	62.06	53.52
CDY12366	Canola	extracellular	51.06	50.7
CDX69621	Canola	vacuole	51.77	49.83
CDY09832	Canola	vacuole	51.77	49.83
CDX78542	Canola	vacuole	51.77	48.99
CDX70524	Canola	vacuole	51.42	48.66
CDX93096	Canola	extracellular	48.94	46.78
CDY69237	Canola	extracellular	48.58	46.44
CDY53771	Canola	extracellular	47.16	45.86
CDX90896	Canola	extracellular	47.16	45.86
CDY22110	Canola	extracellular	47.16	45.86
CDY21985	Canola	extracellular	47.16	45.86
CDY45623	Canola	extracellular	46.1	45.61
CDY08756	Canola	extracellular	46.1	45.61
CDY35228	Canola	extracellular	46.81	45.21
CDY06861	Canola	extracellular	46.45	44.86
CDX72656	Canola	extracellular, vacuole	43.26	41.78
CDY31620	Canola	extracellular, vacuole	42.91	41.3
CDY49788	Canola	extracellular	43.62	41.14
CDX97967	Canola	extracellular	43.26	40.8
CDX71167	Canola	vacuole	42.2	40.07

Protein Annotations

KEGG:00500+2.4.1.20	Gene3D:2.60.120.200	MapMan:50.2.4	GO:A0A078BV43	EnsemblPlants:CDX68640	ProteinID:CDX68640
ProteinID:CDX68640.1	InterPro:ConA-like_dom_sf	InterPro:GH16	InterPro:GH16_AS	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975
GO:GO:0006073	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010411	GO:GO:0016043
GO:GO:0016740	GO:GO:0016762	GO:GO:0016787	GO:GO:0030312	GO:GO:0042546	GO:GO:0048046
GO:GO:0071555	EnsemblPlantsGene:GSBRNA2T00130296001	InterPro:IPR000757	PFAM:PF00722	PFAM:PF06955	PIRSF:PIRSF005604
ScanProsite:PS01034	PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF20	SUPFAM:SSF49899	SignalP:SignalP-noTM
UniParc:UPI0004EEE6EE	InterPro:XET_C	InterPro:XTH	SEG:seg	:	:

Description

BnaC01g08130D

Coordinates

chrLK031789:-:444319..445659

Molecular Weight (calculated)

31868.5 Da

IEP (calculated)

8.809

GRAVY (calculated)

-0.476

Length

282 amino acids

Sequence
(BLAST)

001: MSPFKIFLFS ALLAAAFLAS TADFNSDVNV AWGNGRGKIL NNGQLLTLTL DKSSGSGFQS KTEYLFGKID MQIKLVPGNS AGTVTTFYLK SEGSTWDEID
101: FEFLGNMTGD PYTLHTNVYT QGKGDKEQQF HLWFDPTANF HTYSILWNPQ RIILTVDDTP IREFKNSESL GVLFPKSKPM RMYASLWNAD DWATRGGLVK
201: TDWSKAPFTA SYRNIKVDGC AHSNGRSSCT STKPTSNWYT QEMDSTSQAR LRWVQKNYMI YNYCTDTKRF PQGIPRECAT RS

Best Arabidopsis Sequence Match ( AT4G30270.1 )
(BLAST)

001: MSPFKIFFFT TLLVAAFSVS AADFNTDVNV AWGNGRGKIL NNGQLLTLSL DKSSGSGFQS KTEYLFGKID MQIKLVPGNS AGTVTTFYLK SEGSTWDEID
101: FEFLGNMSGD PYTLHTNVYT QGKGDKEQQF HLWFDPTANF HTYSILWNPQ RIILTVDDTP IREFKNYESL GVLFPKNKPM RMYASLWNAD DWATRGGLVK
201: TDWSKAPFMA SYRNIKIDSK PNSNWYTQEM DSTSQARLKW VQKNYMIYNY CTDHRRFPQG APKECTTSS

Arabidopsis Description

XTH24Xyloglucan endotransglucosylase/hydrolase protein 24 [Source:UniProtKB/Swiss-Prot;Acc:P24806]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.