Factsheet for Bra011179.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28174	Canola	extracellular	100.0	100.0
CDX68640	Canola	extracellular	98.94	98.94
AT4G30270.1	Thale cress	extracellular	87.59	91.82
Bra024089.1-P	Field mustard	extracellular	90.07	91.04
Bra002719.1-P	Field mustard	extracellular	73.4	73.14
Bra020433.1-P	Field mustard	extracellular	65.25	70.77
Bra008806.1-P	Field mustard	extracellular	71.63	70.38
Bra013922.1-P	Field mustard	extracellular	71.63	70.38
VIT_11s0052g01220.t01	Wine grape	extracellular	67.73	67.02
KRH19136	Soybean	nucleus	67.02	66.78
VIT_11s0052g01250.t01	Wine grape	extracellular	67.02	65.4
KRH37378	Soybean	nucleus	60.99	64.66
PGSC0003DMT400036329	Potato	extracellular	63.48	63.48
Bra020434.1-P	Field mustard	extracellular	63.83	63.16
Bra002722.1-P	Field mustard	extracellular	63.48	63.03
Solyc07g009380.2.1	Tomato	extracellular, nucleus	60.99	62.55
Solyc05g046290.2.1	Tomato	extracellular	62.77	61.46
Bra038819.1-P	Field mustard	cytosol, extracellular, nucleus	51.77	61.09
Bra038442.1-P	Field mustard	extracellular	60.64	59.17
Bra020432.1-P	Field mustard	extracellular	58.51	58.3
Bra014975.1-P	Field mustard	extracellular, vacuole	59.22	57.39
Bra013923.1-P	Field mustard	extracellular	57.45	57.04
Bra002723.1-P	Field mustard	extracellular	57.8	56.99
Bra020436.1-P	Field mustard	extracellular	56.38	56.18
KRH12375	Soybean	extracellular	62.41	55.7
Bra019141.1-P	Field mustard	extracellular	56.38	55.59
Bra008796.1-P	Field mustard	cytosol, extracellular, nucleus	50.71	51.25
Bra006220.1-P	Field mustard	vacuole	52.13	50.17
Bra006814.1-P	Field mustard	extracellular	56.74	50.16
Bra013164.1-P	Field mustard	extracellular	49.29	47.12
Bra000840.1-P	Field mustard	extracellular	48.23	46.9
Bra024415.1-P	Field mustard	extracellular	46.1	45.61
Bra011066.1-P	Field mustard	extracellular	46.45	44.86
Bra017855.1-P	Field mustard	extracellular, vacuole	44.33	42.81
Bra040716.1-P	Field mustard	vacuole	42.91	40.74
Bra019846.1-P	Field mustard	extracellular	42.91	40.47
Bra034193.1-P	Field mustard	cytosol	46.81	38.37

Protein Annotations

Gene3D:2.60.120.200	MapMan:50.2.4	EnsemblPlantsGene:Bra011179	EnsemblPlants:Bra011179.1	EnsemblPlants:Bra011179.1-P	InterPro:ConA-like_dom_sf
InterPro:GH16	InterPro:GH16_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975	GO:GO:0006073	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010411	GO:GO:0016043	GO:GO:0016740	GO:GO:0016762
GO:GO:0016787	GO:GO:0016798	GO:GO:0030312	GO:GO:0042546	GO:GO:0048046	GO:GO:0071555
InterPro:IPR000757	UniProt:M4D3X5	PFAM:PF00722	PFAM:PF06955	PIRSF:PIRSF005604	ScanProsite:PS01034
PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF20	SUPFAM:SSF49899	SignalP:SignalP-noTM	UniParc:UPI0002546F7E
InterPro:XET_C	InterPro:XTH	SEG:seg	:	:	:

Description

AT5G57560 (E=2e-124) TCH4, XTH22 | TCH4 (Touch 4); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase

Coordinates

chrA01:+:3462998..3464040

Molecular Weight (calculated)

31839.5 Da

IEP (calculated)

8.809

GRAVY (calculated)

-0.456

Length

282 amino acids

Sequence
(BLAST)

001: MSPFKIFLFS ALLAAAFLAS AADFNSDVNV AWGNGRGKIL NNGQLLTLTL DKSSGSGFQS KTEYLFGKID MQIKLVPGNS AGTVTTFYLK SEGSTWDEID
101: FEFLGNMTGD PYTLHTNVYT QGKGDKEQQF HLWFDPTANF HTYSILWNPQ RIILTVDDTP IREFKNSESL GVLFPKSKPM RMYASLWNAD DWATRGGLVK
201: TDWSKAPFTA SYRNIKIDGC AHSNGRSSCT STKPTSTWYT QEMDSTSQAR LRWVQKNYMI YNYCTDTKRF PQGIPRECAT RS

Best Arabidopsis Sequence Match ( AT4G30270.1 )
(BLAST)

001: MSPFKIFFFT TLLVAAFSVS AADFNTDVNV AWGNGRGKIL NNGQLLTLSL DKSSGSGFQS KTEYLFGKID MQIKLVPGNS AGTVTTFYLK SEGSTWDEID
101: FEFLGNMSGD PYTLHTNVYT QGKGDKEQQF HLWFDPTANF HTYSILWNPQ RIILTVDDTP IREFKNYESL GVLFPKNKPM RMYASLWNAD DWATRGGLVK
201: TDWSKAPFMA SYRNIKIDSK PNSNWYTQEM DSTSQARLKW VQKNYMIYNY CTDHRRFPQG APKECTTSS

Arabidopsis Description

XTH24Xyloglucan endotransglucosylase/hydrolase protein 24 [Source:UniProtKB/Swiss-Prot;Acc:P24806]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.