Factsheet for Bra024089.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
plastid 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39193	Canola	extracellular	97.13	99.63
Bra011179.1-P	Field mustard	extracellular	91.04	90.07
AT4G30270.1	Thale cress	extracellular	86.74	89.96
Bra002719.1-P	Field mustard	extracellular	73.48	72.44
Bra020433.1-P	Field mustard	extracellular	66.31	71.15
Bra013922.1-P	Field mustard	extracellular	72.4	70.38
Bra008806.1-P	Field mustard	extracellular	72.4	70.38
KRH19136	Soybean	nucleus	67.03	66.08
KRH37378	Soybean	nucleus	62.72	65.79
VIT_11s0052g01220.t01	Wine grape	extracellular	67.03	65.61
PGSC0003DMT400036329	Potato	extracellular	65.23	64.54
VIT_11s0052g01250.t01	Wine grape	extracellular	66.67	64.36
Solyc07g009380.2.1	Tomato	extracellular, nucleus	61.65	62.55
Bra020434.1-P	Field mustard	extracellular	63.8	62.46
Bra002722.1-P	Field mustard	extracellular	63.44	62.32
Solyc05g046290.2.1	Tomato	extracellular	63.8	61.81
Bra038819.1-P	Field mustard	cytosol, extracellular, nucleus	51.97	60.67
Bra038442.1-P	Field mustard	extracellular	61.29	59.17
Bra020432.1-P	Field mustard	extracellular	58.06	57.24
Bra014975.1-P	Field mustard	extracellular, vacuole	59.14	56.7
KRH12375	Soybean	extracellular	64.16	56.65
Bra002723.1-P	Field mustard	extracellular	58.06	56.64
Bra020436.1-P	Field mustard	extracellular	56.27	55.48
Bra013923.1-P	Field mustard	extracellular	56.27	55.28
Bra019141.1-P	Field mustard	extracellular	55.56	54.2
Bra006814.1-P	Field mustard	extracellular	56.99	49.84
Bra008796.1-P	Field mustard	cytosol, extracellular, nucleus	49.82	49.82
Bra006220.1-P	Field mustard	vacuole	51.61	49.15
Bra013164.1-P	Field mustard	extracellular	48.75	46.1
Bra024415.1-P	Field mustard	extracellular	46.95	45.96
Bra000840.1-P	Field mustard	extracellular	46.95	45.17
Bra017855.1-P	Field mustard	extracellular, vacuole	45.88	43.84
Bra011066.1-P	Field mustard	extracellular	45.52	43.49
Bra019846.1-P	Field mustard	extracellular	44.09	41.14
Bra040716.1-P	Field mustard	vacuole	41.94	39.39
Bra034193.1-P	Field mustard	cytosol	45.52	36.92

Protein Annotations

Gene3D:2.60.120.200	MapMan:50.2.4	EnsemblPlantsGene:Bra024089	EnsemblPlants:Bra024089.1	EnsemblPlants:Bra024089.1-P	InterPro:ConA-like_dom_sf
InterPro:GH16	InterPro:GH16_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975	GO:GO:0006073	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010411	GO:GO:0016043	GO:GO:0016740	GO:GO:0016762
GO:GO:0016787	GO:GO:0016798	GO:GO:0030312	GO:GO:0042546	GO:GO:0048046	GO:GO:0071555
InterPro:IPR000757	UniProt:M4E5N5	PFAM:PF00722	PFAM:PF06955	PIRSF:PIRSF005604	ScanProsite:PS01034
PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF20	SUPFAM:SSF49899	SignalP:SignalP-noTM	UniParc:UPI0002540DBD
InterPro:XET_C	InterPro:XTH	SEG:seg	:	:	:

Description

AT5G57560 (E=1e-121) TCH4, XTH22 | TCH4 (Touch 4); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase

Coordinates

chrA03:-:27710107..27711220

Molecular Weight (calculated)

31592.3 Da

IEP (calculated)

9.025

GRAVY (calculated)

-0.372

Length

279 amino acids

Sequence
(BLAST)

001: MSPFKIFFFA ALLAAVFSFS AADFNSDVNV AWGNGRGKIL NNGQLLTLSL DRSSGSGFQS KTEYLFGKID MQIKLVPGNS AGTVTTFYLK SEGSTWDEID
101: FEFLGNMSGD PYTLHTNVYT QGKGDKEQQF YLWFDPTANF HTYSILWNPQ RIILTVDGTP IREFKNSESI GVLFPKSKPM RMYASLWNAD DWATRGGLVK
201: TDWSKAPFMA SYRNIKIEGC VHINGRSSCS PSSSWYTQQM DATSQARLRW VQKNYMIYNY CTDRKRFPQG IPRECAPSA

Best Arabidopsis Sequence Match ( AT4G30270.1 )
(BLAST)

001: MSPFKIFFFT TLLVAAFSVS AADFNTDVNV AWGNGRGKIL NNGQLLTLSL DKSSGSGFQS KTEYLFGKID MQIKLVPGNS AGTVTTFYLK SEGSTWDEID
101: FEFLGNMSGD PYTLHTNVYT QGKGDKEQQF HLWFDPTANF HTYSILWNPQ RIILTVDDTP IREFKNYESL GVLFPKNKPM RMYASLWNAD DWATRGGLVK
201: TDWSKAPFMA SYRNIKIDSK PNSNWYTQEM DSTSQARLKW VQKNYMIYNY CTDHRRFPQG APKECTTSS

Arabidopsis Description

XTH24Xyloglucan endotransglucosylase/hydrolase protein 24 [Source:UniProtKB/Swiss-Prot;Acc:P24806]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.