Factsheet for VIT_11s0052g01220.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0052g01330.t01	Wine grape	extracellular, vacuole	76.49	83.21
VIT_11s0052g01300.t01	Wine grape	extracellular	86.32	83.11
VIT_11s0052g01280.t01	Wine grape	endoplasmic reticulum, extracellular	86.32	83.11
VIT_11s0052g01320.t01	Wine grape	extracellular	86.32	83.11
VIT_11s0052g01260.t01	Wine grape	endoplasmic reticulum, extracellular	85.61	82.43
VIT_11s0052g01200.t01	Wine grape	extracellular	85.26	81.82
VIT_11s0052g01270.t01	Wine grape	extracellular	83.51	80.13
VIT_11s0052g01340.t01	Wine grape	extracellular	75.09	78.68
VIT_11s0052g01250.t01	Wine grape	extracellular	77.19	76.12
VIT_05s0062g00480.t01	Wine grape	cytosol	70.18	75.47
VIT_05s0062g00610.t01	Wine grape	cytosol	70.18	75.47
VIT_11s0052g01230.t01	Wine grape	cytosol	72.63	74.46
VIT_11s0052g01310.t01	Wine grape	extracellular	70.18	74.35
VIT_05s0062g00250.t01	Wine grape	extracellular	72.63	74.19
VIT_10s0003g02440.t01	Wine grape	extracellular	70.53	73.63
VIT_11s0052g01180.t01	Wine grape	cytosol	82.81	73.52
VIT_05s0062g00240.t01	Wine grape	extracellular	71.23	72.24
CDX89393	Canola	extracellular	72.28	71.78
Bra013922.1-P	Field mustard	extracellular	72.28	71.78
Bra008806.1-P	Field mustard	extracellular	72.28	71.78
AT4G25810.1	Thale cress	extracellular	71.93	71.68
Bra002719.1-P	Field mustard	extracellular	70.88	71.38
CDX94413	Canola	extracellular	71.58	71.08
CDY59999	Canola	extracellular	61.05	70.45
CDY25903	Canola	extracellular	64.21	70.38
CDY67487	Canola	extracellular	63.16	69.23
AT4G30270.1	Thale cress	extracellular	64.91	68.77
Bra020433.1-P	Field mustard	extracellular	62.11	68.08
CDY28174	Canola	extracellular	67.02	67.73
CDX68640	Canola	extracellular	67.02	67.73
Bra011179.1-P	Field mustard	extracellular	67.02	67.73
AT5G57560.1	Thale cress	extracellular	67.37	67.61
CDY39193	Canola	extracellular	64.21	67.28
Bra024089.1-P	Field mustard	extracellular	65.61	67.03
CDY66832	Canola	extracellular	63.16	66.42
CDY14905	Canola	extracellular	63.16	66.42
CDX72228	Canola	extracellular	64.56	65.95
VIT_11s0052g01190.t01	Wine grape	vacuole	85.26	65.85
CDX72227	Canola	extracellular	62.11	65.31
CDY02741	Canola	extracellular	60.7	58.84
CDY03539	Canola	endoplasmic reticulum, extracellular	63.16	57.69
VIT_11s0016g03480.t01	Wine grape	extracellular	54.04	52.92
VIT_17s0053g00610.t01	Wine grape	cytosol	39.3	51.85
VIT_01s0150g00460.t01	Wine grape	extracellular	53.33	49.51
VIT_03s0088g00650.t01	Wine grape	extracellular, vacuole	49.12	47.46
VIT_10s0116g00520.t01	Wine grape	extracellular, vacuole	46.67	44.33
VIT_12s0134g00160.t01	Wine grape	extracellular	45.96	44.26
VIT_11s0052g01210.t01	Wine grape	extracellular, plastid	72.63	13.08

Protein Annotations

EntrezGene:100241119	wikigene:100241119	Gene3D:2.60.120.200	MapMan:50.2.4	ProteinID:CCB44632	ProteinID:CCB44632.1
InterPro:ConA-like_dom_sf	UniProt:F6GXE6	EMBL:FN594964	InterPro:GH16	InterPro:GH16_AS	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0005975	GO:GO:0006073	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010411
GO:GO:0016043	GO:GO:0016740	GO:GO:0016762	GO:GO:0016787	GO:GO:0016798	GO:GO:0030312
GO:GO:0042546	GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757	EntrezGene:LOC100241119	wikigene:LOC100241119
PFAM:PF00722	PFAM:PF06955	PIRSF:PIRSF005604	ScanProsite:PS01034	PFscan:PS51762	PANTHER:PTHR31062
PANTHER:PTHR31062:SF100	SUPFAM:SSF49899	SignalP:SignalP-noTM	UniParc:UPI00015CB3A0	ArrayExpress:VIT_11s0052g01220	EnsemblPlantsGene:VIT_11s0052g01220
EnsemblPlants:VIT_11s0052g01220.t01	InterPro:XET_C	RefSeq:XP_002270299	RefSeq:XP_002270299.1	InterPro:XTH	SEG:seg

Description

Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:F6GXE6]

Coordinates

chr11:-:18957757..18958891

Molecular Weight (calculated)

31823.0 Da

IEP (calculated)

6.261

GRAVY (calculated)

-0.404

Length

285 amino acids

Sequence
(BLAST)

001: MASSSILVLM LSMLVVASGG NFNQDFDITW GDGRAKILNN GQLLTLSLDK ASGSGFQSRN EYLFGKIDMQ LKLVSGNSAG TVTAYYLSSQ GSAHDEIDFE
101: FLGNLSGDPY ILHTNVFSQG KGNREQQFYL WFDPTADFHT YSILWNPQLI IFSVDGTPIR QFKNLESKGV AYPKNQPMRI YSSLWNADDW ATRGGLVKTD
201: WSQAPFTASY RNFNANACVW SSGSSSCSKN SSSTTSNAWL YQELDSSSQE KLKWVQKNYM IYNYCTDTKR FPQGLPPECT ATNNS

Best Arabidopsis Sequence Match ( AT4G25810.1 )
(BLAST)

001: MAMISYSTIV VALLASFMIC SVSANFQRDV EITWGDGRGQ ITNNGDLLTL SLDKASGSGF QSKNEYLFGK IDMQIKLVAG NSAGTVTAYY LKSPGSTWDE
101: IDFEFLGNLS GDPYTLHTNV FTQGKGDREQ QFKLWFDPTS DFHTYSILWN PQRIIFSVDG TPIREFKNME SQGTLFPKNQ PMRMYSSLWN AEEWATRGGL
201: VKTDWSKAPF TASYRGFNEE ACVVINGQSS CPNVSGQGST GSWLSQELDS TGQEQMRWVQ NNYMIYNYCT DAKRFPQGLP RECLAA

Arabidopsis Description

XTH23Probable xyloglucan endotransglucosylase/hydrolase protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q38910]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.