Factsheet for VIT_11s0052g01310.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
nucleus 1
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, extracellular
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0052g01270.t01	Wine grape	extracellular	86.62	78.45
VIT_11s0052g01200.t01	Wine grape	extracellular	84.01	76.09
VIT_11s0052g01330.t01	Wine grape	extracellular, vacuole	73.61	75.57
VIT_11s0052g01340.t01	Wine grape	extracellular	74.72	73.9
VIT_11s0052g01320.t01	Wine grape	extracellular	79.18	71.96
VIT_11s0052g01280.t01	Wine grape	endoplasmic reticulum, extracellular	78.81	71.62
VIT_11s0052g01260.t01	Wine grape	endoplasmic reticulum, extracellular	78.07	70.95
VIT_11s0052g01300.t01	Wine grape	extracellular	77.7	70.61
VIT_11s0052g01220.t01	Wine grape	extracellular	74.35	70.18
VIT_11s0052g01250.t01	Wine grape	extracellular	74.35	69.2
Solyc03g093080.2.1	Tomato	extracellular	72.86	68.53
Solyc03g093120.2.1	Tomato	extracellular	72.12	67.83
VIT_11s0052g01180.t01	Wine grape	cytosol	80.67	67.6
Solyc03g093130.2.1	Tomato	extracellular	72.12	67.6
VIT_05s0062g00610.t01	Wine grape	cytosol	66.54	67.55
PGSC0003DMT400038413	Potato	extracellular	71.75	67.48
VIT_05s0062g00480.t01	Wine grape	cytosol	66.17	67.17
VIT_10s0003g02440.t01	Wine grape	extracellular	68.03	67.03
Solyc03g093110.2.1	Tomato	extracellular	71.0	66.55
VIT_05s0062g00250.t01	Wine grape	extracellular	68.4	65.95
VIT_11s0052g01230.t01	Wine grape	cytosol	67.66	65.47
VIT_05s0062g00240.t01	Wine grape	extracellular	66.91	64.06
VIT_11s0052g01190.t01	Wine grape	vacuole	79.93	58.27
VIT_11s0016g03480.t01	Wine grape	extracellular	50.56	46.74
VIT_17s0053g00610.t01	Wine grape	cytosol	36.43	45.37
VIT_01s0150g00460.t01	Wine grape	extracellular	51.67	45.28
VIT_03s0088g00650.t01	Wine grape	extracellular, vacuole	47.58	43.39
VIT_12s0134g00160.t01	Wine grape	extracellular	45.35	41.22
VIT_10s0116g00520.t01	Wine grape	extracellular, vacuole	44.61	40.0
VIT_11s0052g01210.t01	Wine grape	extracellular, plastid	69.52	11.81

Protein Annotations

EntrezGene:100258257	wikigene:100258257	Gene3D:2.60.120.200	MapMan:50.2.4	ProteinID:CCB44623	ProteinID:CCB44623.1
InterPro:ConA-like_dom_sf	UniProt:F6GXD7	EMBL:FN594964	InterPro:GH16	InterPro:GH16_AS	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010411	GO:GO:0016740	GO:GO:0016762	GO:GO:0016787	GO:GO:0042546	InterPro:IPR000757
EntrezGene:LOC100258257	wikigene:LOC100258257	PFAM:PF00722	PIRSF:PIRSF005604	ScanProsite:PS01034	PFscan:PS51762
PANTHER:PTHR31062	PANTHER:PTHR31062:SF100	SUPFAM:SSF49899	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000210897A
ArrayExpress:VIT_11s0052g01310	EnsemblPlantsGene:VIT_11s0052g01310	EnsemblPlants:VIT_11s0052g01310.t01	RefSeq:XP_002270375	RefSeq:XP_002270375.1	InterPro:XTH

Description

No Description!

Coordinates

chr11:+:19007731..19010594

Molecular Weight (calculated)

30178.2 Da

IEP (calculated)

6.002

GRAVY (calculated)

-0.275

Length

269 amino acids

Sequence
(BLAST)

001: MAPIYSSSSA VSTALLISVV VSFLMAASAG NFYQDFDITW GDRRAKILDN GEFLTLSLDT TSGSGFQSKN EYLFGKIDMQ LKLVPGNSAG TVTAYYLSSQ
101: GPTHDEIDFE FLGNLSGDPY ILHTNVFSQG KGNREQQFYL WFDPTADFHT YSILWNPQRI IFSVDGTPIR EFKNSESIGV PFPKNQPMRI YSSLWNADDW
201: ATRGGLVKTD WTQAPFTASY RNFNADACIW SSGAFSCSSN TPLLSPPTHQ HSQFQNKTIY FRVVTPYKY

Best Arabidopsis Sequence Match ( AT3G23730.1 )
(BLAST)

001: MGRILNRTVL MTLLVVTMAG TAFSGSFNEE FDLTWGEHRG KIFSGGKMLS LSLDRVSGSG FKSKKEYLFG RIDMQLKLVA GNSAGTVTAY YLSSEGPTHD
101: EIDFEFLGNE TGKPYVLHTN VFAQGKGNRE QQFYLWFDPT KNFHTYSLVW RPQHIIFMVD NVPIRVFNNA EQLGVPFPKN QPMKIYSSLW NADDWATRGG
201: LVKTDWSKAP FTAYYRGFNA AACTVSSGSS FCDPKFKSSF TNGESQVANE LNAYGRRRLR WVQKYFMIYD YCSDLKRFPQ GFPPECRKSR V

Arabidopsis Description

XTH16Probable xyloglucan endotransglucosylase/hydrolase protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG58]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.