Factsheet for VIT_11s0052g01330.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
nucleus 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	vacuole
Plant-mPloc:	cytosol, extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0052g01320.t01	Wine grape	extracellular	90.84	80.41
VIT_11s0052g01270.t01	Wine grape	extracellular	90.84	80.13
VIT_11s0052g01300.t01	Wine grape	extracellular	90.08	79.73
VIT_11s0052g01280.t01	Wine grape	endoplasmic reticulum, extracellular	90.08	79.73
VIT_11s0052g01200.t01	Wine grape	extracellular	90.08	79.46
VIT_11s0052g01260.t01	Wine grape	endoplasmic reticulum, extracellular	89.31	79.05
VIT_11s0052g01340.t01	Wine grape	extracellular	81.3	78.31
VIT_11s0052g01220.t01	Wine grape	extracellular	83.21	76.49
VIT_11s0052g01310.t01	Wine grape	extracellular	75.57	73.61
VIT_11s0052g01180.t01	Wine grape	cytosol	89.69	73.21
Solyc03g093080.2.1	Tomato	extracellular	79.01	72.38
PGSC0003DMT400038413	Potato	extracellular	79.01	72.38
Solyc03g093120.2.1	Tomato	extracellular	78.63	72.03
Solyc03g093130.2.1	Tomato	extracellular	78.63	71.78
Solyc03g093110.2.1	Tomato	extracellular	78.24	71.43
VIT_11s0052g01250.t01	Wine grape	extracellular	78.24	70.93
VIT_05s0062g00480.t01	Wine grape	cytosol	70.99	70.19
VIT_05s0062g00610.t01	Wine grape	cytosol	70.61	69.81
VIT_11s0052g01230.t01	Wine grape	cytosol	73.66	69.42
VIT_10s0003g02440.t01	Wine grape	extracellular	72.14	69.23
VIT_11s0052g01190.t01	Wine grape	vacuole	95.42	67.75
VIT_05s0062g00250.t01	Wine grape	extracellular	72.14	67.74
VIT_05s0062g00240.t01	Wine grape	extracellular	69.85	65.12
VIT_17s0053g00610.t01	Wine grape	cytosol	41.98	50.93
VIT_11s0016g03480.t01	Wine grape	extracellular	55.73	50.17
VIT_01s0150g00460.t01	Wine grape	extracellular	57.63	49.19
VIT_12s0134g00160.t01	Wine grape	extracellular	50.0	44.26
VIT_03s0088g00650.t01	Wine grape	extracellular, vacuole	49.62	44.07
VIT_10s0116g00520.t01	Wine grape	extracellular, vacuole	48.09	42.0
VIT_11s0052g01210.t01	Wine grape	extracellular, plastid	72.52	12.0

Protein Annotations

Gene3D:2.60.120.200	MapMan:50.2.4	ProteinID:CCB44621	ProteinID:CCB44621.1	InterPro:ConA-like_dom_sf	UniProt:F6GXD5
EMBL:FN594964	InterPro:GH16	InterPro:GH16_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975	GO:GO:0006073
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010411	GO:GO:0016043	GO:GO:0016740
GO:GO:0016762	GO:GO:0016787	GO:GO:0016798	GO:GO:0030312	GO:GO:0042546	GO:GO:0048046
GO:GO:0071555	InterPro:IPR000757	PFAM:PF00722	PFAM:PF06955	PIRSF:PIRSF005604	ScanProsite:PS01034
PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF100	SUPFAM:SSF49899	SignalP:SignalP-noTM	UniParc:UPI0002108979
ArrayExpress:VIT_11s0052g01330	EnsemblPlantsGene:VIT_11s0052g01330	EnsemblPlants:VIT_11s0052g01330.t01	InterPro:XET_C	InterPro:XTH	SEG:seg

Description

Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:F6GXD5]

Coordinates

chr11:+:19013045..19015143

Molecular Weight (calculated)

29510.4 Da

IEP (calculated)

5.715

GRAVY (calculated)

-0.459

Length

262 amino acids

Sequence
(BLAST)

001: MLFSFLTFLA KILDNGQLLT LSLDKTSGSG FQSKNEYMFG KIDMQLKLVP GNSAGTVTAY YLSSQGPTHD EIDFEFLGNL SGDPYILHTN VFSQGKGNRE
101: QQFYLWFDPT ANFHSYSILW NPQRIIFSVD GTPIREFKNS ESIGVPYPKN QPMRIYSSLW NADDWATRGG LVKTDWTQAP FTASYRNFNA DACIWSSGAS
201: SCSSTTPSST STSGQWYSQE LDSTSQERMK WVQKNYMIYN YCTDTKRVPQ GLPPECTAAT MS

Best Arabidopsis Sequence Match ( AT3G23730.1 )
(BLAST)

001: MGRILNRTVL MTLLVVTMAG TAFSGSFNEE FDLTWGEHRG KIFSGGKMLS LSLDRVSGSG FKSKKEYLFG RIDMQLKLVA GNSAGTVTAY YLSSEGPTHD
101: EIDFEFLGNE TGKPYVLHTN VFAQGKGNRE QQFYLWFDPT KNFHTYSLVW RPQHIIFMVD NVPIRVFNNA EQLGVPFPKN QPMKIYSSLW NADDWATRGG
201: LVKTDWSKAP FTAYYRGFNA AACTVSSGSS FCDPKFKSSF TNGESQVANE LNAYGRRRLR WVQKYFMIYD YCSDLKRFPQ GFPPECRKSR V

Arabidopsis Description

XTH16Probable xyloglucan endotransglucosylase/hydrolase protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG58]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.