Factsheet for VIT_11s0052g01190.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 4
plasma membrane 2
golgi 2
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	vacuole
Plant-mPloc:	cytosol, extracellular
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0052g01330.t01	Wine grape	extracellular, vacuole	67.75	95.42
VIT_11s0052g01280.t01	Wine grape	endoplasmic reticulum, extracellular	75.34	93.92
VIT_11s0052g01320.t01	Wine grape	extracellular	75.07	93.58
VIT_11s0052g01300.t01	Wine grape	extracellular	74.53	92.91
VIT_11s0052g01260.t01	Wine grape	endoplasmic reticulum, extracellular	73.98	92.23
VIT_11s0052g01200.t01	Wine grape	extracellular	70.46	87.54
VIT_11s0052g01270.t01	Wine grape	extracellular	70.19	87.21
VIT_11s0052g01340.t01	Wine grape	extracellular	62.87	85.29
VIT_11s0052g01220.t01	Wine grape	extracellular	65.85	85.26
PGSC0003DMT400038413	Potato	extracellular	62.6	80.77
VIT_11s0052g01180.t01	Wine grape	cytosol	70.19	80.69
Solyc03g093080.2.1	Tomato	extracellular	62.06	80.07
VIT_11s0052g01310.t01	Wine grape	extracellular	58.27	79.93
Solyc03g093120.2.1	Tomato	extracellular	61.79	79.72
Solyc03g093130.2.1	Tomato	extracellular	61.25	78.75
Solyc03g093110.2.1	Tomato	extracellular	60.98	78.4
VIT_11s0052g01250.t01	Wine grape	extracellular	60.7	77.51
VIT_11s0052g01230.t01	Wine grape	cytosol	57.18	75.9
VIT_05s0062g00610.t01	Wine grape	cytosol	54.47	75.85
VIT_05s0062g00480.t01	Wine grape	cytosol	54.47	75.85
VIT_05s0062g00250.t01	Wine grape	extracellular	56.37	74.55
VIT_10s0003g02440.t01	Wine grape	extracellular	55.01	74.36
VIT_05s0062g00240.t01	Wine grape	extracellular	54.74	71.89
VIT_11s0016g03480.t01	Wine grape	extracellular	42.82	54.3
VIT_01s0150g00460.t01	Wine grape	extracellular	43.9	52.77
VIT_17s0053g00610.t01	Wine grape	cytosol	30.35	51.85
VIT_03s0088g00650.t01	Wine grape	extracellular, vacuole	37.94	47.46
VIT_12s0134g00160.t01	Wine grape	extracellular	37.13	46.28
VIT_10s0116g00520.t01	Wine grape	extracellular, vacuole	35.5	43.67
VIT_11s0052g01210.t01	Wine grape	extracellular, plastid	58.81	13.71

Protein Annotations

EntrezGene:100247836	wikigene:100247836	EntrezGene:100256520	wikigene:100256520	Gene3D:2.60.120.200	MapMan:50.2.4
EMBL:AM430670	EMBL:AM465512	ProteinID:CAN74784	ProteinID:CAN74784.1	ProteinID:CAN80250	ProteinID:CAN80250.1
ProteinID:CAN80252	ProteinID:CAN80252.1	ProteinID:CCB44634	ProteinID:CCB44634.1	InterPro:ConA-like_dom_sf	UniProt:F6GXE8
EMBL:FN594964	InterPro:GH16	InterPro:GH16_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975	GO:GO:0006073
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0016762
GO:GO:0016787	GO:GO:0016798	GO:GO:0030312	GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757
EntrezGene:LOC100247836	wikigene:LOC100247836	EntrezGene:LOC100256520	wikigene:LOC100256520	PFAM:PF00722	PFAM:PF06955
ScanProsite:PS01034	PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF100	SUPFAM:SSF49899	UniParc:UPI000210897D
ArrayExpress:VIT_11s0052g01190	EnsemblPlantsGene:VIT_11s0052g01190	EnsemblPlants:VIT_11s0052g01190.t01	InterPro:XET_C	RefSeq:XP_002270182	RefSeq:XP_002270182.1
RefSeq:XP_003633212	RefSeq:XP_003633212.1	SEG:seg	:	:	:

Description

Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:F6GXE8]

Coordinates

chr11:-:18944324..18946577

Molecular Weight (calculated)

41706.6 Da

IEP (calculated)

6.845

GRAVY (calculated)

-0.454

Length

369 amino acids

Sequence
(BLAST)

001: MLKFDEWCLG NGKVDLHFSL LNPCKIRLLT EPSSRSPSTF PHDTYYKTPT YPRHSLHFHA QNYFHFSSLN SHSMASPSTW NLSPKLFLVS LLLGSFVVAS
101: VGNLYQDFEI TWGDGRAKIL NNGELLTLSL DKTSGSGFQS KNEYLFGKID MQLKLVPGNS AGTVTAYYLS SQGPTHDEID FEFLGNLSGD PYILHTNVFS
201: QGKGNREQQF YLWFDPTADF HTYSILWNPQ RIIFSVDGTP IREFKNSESI GVSYPKNQPM RIYSSLWNAD DWATRGGLVK TDWSQAPFTA SYRNFNADAC
301: IWSSGASSCS STTPSSTSTS GQWYSQELDS TSQERMKWVQ KNYMIYNYCT DTKRFPQGLP PECTATTLS

Best Arabidopsis Sequence Match ( AT4G25810.1 )
(BLAST)

001: MAMISYSTIV VALLASFMIC SVSANFQRDV EITWGDGRGQ ITNNGDLLTL SLDKASGSGF QSKNEYLFGK IDMQIKLVAG NSAGTVTAYY LKSPGSTWDE
101: IDFEFLGNLS GDPYTLHTNV FTQGKGDREQ QFKLWFDPTS DFHTYSILWN PQRIIFSVDG TPIREFKNME SQGTLFPKNQ PMRMYSSLWN AEEWATRGGL
201: VKTDWSKAPF TASYRGFNEE ACVVINGQSS CPNVSGQGST GSWLSQELDS TGQEQMRWVQ NNYMIYNYCT DAKRFPQGLP RECLAA

Arabidopsis Description

XTH23Probable xyloglucan endotransglucosylase/hydrolase protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q38910]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.