Factsheet for PGSC0003DMT400038413

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol, extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g093080.2.1	Tomato	extracellular	95.1	95.1
Solyc03g093120.2.1	Tomato	extracellular	94.06	94.06
Solyc03g093130.2.1	Tomato	extracellular	93.71	93.38
Solyc03g093110.2.1	Tomato	extracellular	93.01	92.68
VIT_11s0052g01330.t01	Wine grape	extracellular, vacuole	72.38	79.01
VIT_11s0052g01280.t01	Wine grape	endoplasmic reticulum, extracellular	79.72	77.03
KRH02893	Soybean	extracellular	76.57	76.84
KRH02890	Soybean	extracellular	76.57	76.84
VIT_11s0052g01320.t01	Wine grape	extracellular	79.37	76.69
KRH19005	Soybean	vacuole	75.87	76.14
VIT_11s0052g01260.t01	Wine grape	endoplasmic reticulum, extracellular	78.67	76.01
VIT_11s0052g01200.t01	Wine grape	extracellular	78.67	75.76
VIT_11s0052g01300.t01	Wine grape	extracellular	78.32	75.68
KRH19002	Soybean	extracellular	75.17	75.44
VIT_11s0052g01270.t01	Wine grape	extracellular	76.92	74.07
KRH02892	Soybean	extracellular	74.13	73.87
KRH02894	Soybean	endoplasmic reticulum, extracellular	75.17	73.63
KRH19003	Soybean	extracellular	73.08	72.82
VIT_11s0052g01340.t01	Wine grape	extracellular	68.88	72.43
VIT_11s0052g01310.t01	Wine grape	extracellular	67.48	71.75
KRH02895	Soybean	cytosol	73.08	71.33
PGSC0003DMT400048241	Potato	extracellular	70.28	70.53
PGSC0003DMT400036329	Potato	extracellular	68.53	69.5
VIT_11s0052g01180.t01	Wine grape	cytosol	77.97	69.47
PGSC0003DMT400056316	Potato	extracellular	64.69	67.03
PGSC0003DMT400048242	Potato	extracellular	63.29	64.87
PGSC0003DMT400011902	Potato	extracellular	61.89	63.44
VIT_11s0052g01190.t01	Wine grape	vacuole	80.77	62.6
PGSC0003DMT400020314	Potato	cytosol, nucleus, peroxisome	57.34	59.85
PGSC0003DMT400079856	Potato	extracellular	59.79	59.58
PGSC0003DMT400005949	Potato	cytosol	40.21	59.28
PGSC0003DMT400044562	Potato	extracellular	59.09	58.88
PGSC0003DMT400020122	Potato	extracellular	57.69	56.9
PGSC0003DMT400044559	Potato	extracellular	57.34	56.55
PGSC0003DMT400048240	Potato	golgi	63.99	53.51
PGSC0003DMT400028324	Potato	vacuole	51.05	49.49
PGSC0003DMT400026398	Potato	extracellular	47.55	48.06
PGSC0003DMT400063689	Potato	vacuole	48.6	46.96
PGSC0003DMT400067358	Potato	extracellular	48.25	46.62
PGSC0003DMT400005591	Potato	extracellular	48.25	46.62
PGSC0003DMT400055138	Potato	extracellular	46.15	44.75
PGSC0003DMT400061841	Potato	extracellular	44.76	43.39
PGSC0003DMT400013128	Potato	extracellular	23.43	41.88
PGSC0003DMT400005342	Potato	extracellular	42.66	40.94

Protein Annotations

EntrezGene:102598758	EntrezGene:102599527	Gene3D:2.60.120.200	MapMan:50.2.4	InterPro:ConA-like_dom_sf	InterPro:GH16
InterPro:GH16_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576
GO:GO:0005618	GO:GO:0005623	GO:GO:0005975	GO:GO:0006073	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010411	GO:GO:0016043	GO:GO:0016740	GO:GO:0016762	GO:GO:0016787
GO:GO:0016798	GO:GO:0030312	GO:GO:0042546	GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757
UniProt:M1B6U0	PFAM:PF00722	PFAM:PF06955	EnsemblPlantsGene:PGSC0003DMG400014823	PGSC:PGSC0003DMG400014823	EnsemblPlants:PGSC0003DMT400038413
PIRSF:PIRSF005604	ScanProsite:PS01034	PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF101	SUPFAM:SSF49899
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000295BF69	InterPro:XET_C	RefSeq:XP_006358261.1	InterPro:XTH
SEG:seg	:	:	:	:	:

Description

Xyloglucan endotransglucosylase-hydrolase XTH3 [Source:PGSC_GENE;Acc:PGSC0003DMG400014823]

Coordinates

chr3:+:38778112..38779300

Molecular Weight (calculated)

32147.3 Da

IEP (calculated)

5.076

GRAVY (calculated)

-0.467

Length

286 amino acids

Sequence
(BLAST)

001: MASSSKLVLV MCFMVSAFGI AIGNTLDQEF EITWGDGRAK ILNNGDLLTL SLDKISGSGF QSKNEYLFGK IDMQLKLVSG NSAGTVTAYY LSSQGPTHDE
101: IDFEFLGNLS GDPYTLHTNV FSQGKGNREQ QFHLWFDPTA DFHTYSITWN PQRIIFYVDG TPIREYKNSE SMGVSYPKNQ PMRIYSSLWN ADDWATRGGL
201: VKTDWSQAPF SASYRNFSAN ACIPSSSSSC NSNTTTSTSN SWLNEELDST SQERLKWVQK NYMVYNYCTD SKRFPQGFPV DCVQNN

Best Arabidopsis Sequence Match ( AT4G25810.1 )
(BLAST)

001: MAMISYSTIV VALLASFMIC SVSANFQRDV EITWGDGRGQ ITNNGDLLTL SLDKASGSGF QSKNEYLFGK IDMQIKLVAG NSAGTVTAYY LKSPGSTWDE
101: IDFEFLGNLS GDPYTLHTNV FTQGKGDREQ QFKLWFDPTS DFHTYSILWN PQRIIFSVDG TPIREFKNME SQGTLFPKNQ PMRMYSSLWN AEEWATRGGL
201: VKTDWSKAPF TASYRGFNEE ACVVINGQSS CPNVSGQGST GSWLSQELDS TGQEQMRWVQ NNYMIYNYCT DAKRFPQGLP RECLAA

Arabidopsis Description

XTH23Probable xyloglucan endotransglucosylase/hydrolase protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q38910]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.