Factsheet for PGSC0003DMT400005949

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g017240.1.1	Tomato	extracellular	95.88	64.36
PGSC0003DMT400079856	Potato	extracellular	93.81	63.41
PGSC0003DMT400044562	Potato	extracellular	92.27	62.37
PGSC0003DMT400020314	Potato	cytosol, nucleus, peroxisome	71.65	50.73
PGSC0003DMT400020122	Potato	extracellular	70.62	47.24
PGSC0003DMT400044559	Potato	extracellular	70.1	46.9
PGSC0003DMT400056316	Potato	extracellular	60.82	42.75
PGSC0003DMT400011902	Potato	extracellular	60.31	41.94
PGSC0003DMT400048241	Potato	extracellular	59.28	40.35
PGSC0003DMT400038413	Potato	extracellular	59.28	40.21
PGSC0003DMT400048242	Potato	extracellular	57.73	40.14
PGSC0003DMT400036329	Potato	extracellular	55.15	37.94
PGSC0003DMT400028324	Potato	vacuole	50.52	33.22
KRH73676	Soybean	extracellular	48.45	33.22
PGSC0003DMT400026398	Potato	extracellular	47.94	32.86
PGSC0003DMT400048240	Potato	golgi	57.73	32.75
PGSC0003DMT400067358	Potato	extracellular	49.48	32.43
PGSC0003DMT400005591	Potato	extracellular	48.97	32.09
KRH14468	Soybean	extracellular	47.42	31.94
PGSC0003DMT400063689	Potato	vacuole	48.45	31.76
KRG98913	Soybean	vacuole	45.88	30.9
PGSC0003DMT400055138	Potato	extracellular	46.39	30.51
PGSC0003DMT400061841	Potato	extracellular	43.81	28.81
PGSC0003DMT400005342	Potato	extracellular	42.78	27.85
PGSC0003DMT400013128	Potato	extracellular	17.53	21.25

Protein Annotations

Gene3D:2.60.120.200	MapMan:50.2.4	InterPro:ConA-like_dom_sf	InterPro:GH16	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975
GO:GO:0006073	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016762
GO:GO:0016787	GO:GO:0030312	GO:GO:0048046	InterPro:IPR000757	UniProt:M0ZQL4	PFAM:PF00722
PFAM:PF06955	EnsemblPlantsGene:PGSC0003DMG400002309	PGSC:PGSC0003DMG400002309	EnsemblPlants:PGSC0003DMT400005949	PFscan:PS51762	PANTHER:PTHR31062
PANTHER:PTHR31062:SF62	SUPFAM:SSF49899	UniParc:UPI0002968723	InterPro:XET_C	:	:

Description

Xyloglucan endo-transglycosylase [Source:PGSC_GENE;Acc:PGSC0003DMG400002309]

Coordinates

chr12:-:10678069..10679327

Molecular Weight (calculated)

22335.9 Da

IEP (calculated)

9.584

GRAVY (calculated)

-0.684

Length

194 amino acids

Sequence
(BLAST)

001: MKFDFEFLGN SSGQPYTVHT NVYSQGKGNK EQQFRLWFDP TSSFHTYSIV WNSQRIIFLV DNIPIRVFNN HEAIGVAFPK NQAMRVYASL RNADDWATQG
101: GRVKTDWSMA PFTDSYRNFN TNACVWSAAL STSSCGGSKT DSVNNDQAWQ TQELNGNGRN RLRWVQQKYM IYNYCADAKR FSQGLSPECK RSRF

Best Arabidopsis Sequence Match ( AT3G23730.1 )
(BLAST)

001: MGRILNRTVL MTLLVVTMAG TAFSGSFNEE FDLTWGEHRG KIFSGGKMLS LSLDRVSGSG FKSKKEYLFG RIDMQLKLVA GNSAGTVTAY YLSSEGPTHD
101: EIDFEFLGNE TGKPYVLHTN VFAQGKGNRE QQFYLWFDPT KNFHTYSLVW RPQHIIFMVD NVPIRVFNNA EQLGVPFPKN QPMKIYSSLW NADDWATRGG
201: LVKTDWSKAP FTAYYRGFNA AACTVSSGSS FCDPKFKSSF TNGESQVANE LNAYGRRRLR WVQKYFMIYD YCSDLKRFPQ GFPPECRKSR V

Arabidopsis Description

XTH16Probable xyloglucan endotransglucosylase/hydrolase protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG58]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.