Factsheet for PGSC0003DMT400044562

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
nucleus 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079856	Potato	extracellular	98.26	98.26
Solyc07g056000.2.1	Tomato	extracellular, nucleus	96.52	96.52
PGSC0003DMT400005949	Potato	cytosol	62.37	92.27
PGSC0003DMT400020314	Potato	cytosol, nucleus, peroxisome	68.29	71.53
PGSC0003DMT400020122	Potato	extracellular	69.34	68.62
PGSC0003DMT400044559	Potato	extracellular	67.6	66.9
PGSC0003DMT400056316	Potato	extracellular	61.32	63.77
PGSC0003DMT400048241	Potato	extracellular	60.63	61.05
PGSC0003DMT400011902	Potato	extracellular	58.54	60.22
PGSC0003DMT400038413	Potato	extracellular	58.88	59.09
PGSC0003DMT400036329	Potato	extracellular	57.49	58.51
PGSC0003DMT400048242	Potato	extracellular	55.4	56.99
KRH73676	Soybean	extracellular	53.31	54.06
KRH14468	Soybean	extracellular	52.26	52.08
KRG98913	Soybean	vacuole	49.13	48.96
PGSC0003DMT400048240	Potato	golgi	57.49	48.25
PGSC0003DMT400026398	Potato	extracellular	45.64	46.29
PGSC0003DMT400005591	Potato	extracellular	47.39	45.95
PGSC0003DMT400063689	Potato	vacuole	45.99	44.59
PGSC0003DMT400028324	Potato	vacuole	45.64	44.41
PGSC0003DMT400055138	Potato	extracellular	45.64	44.41
PGSC0003DMT400067358	Potato	extracellular	45.64	44.26
PGSC0003DMT400013128	Potato	extracellular	24.04	43.12
PGSC0003DMT400061841	Potato	extracellular	40.07	38.98
PGSC0003DMT400005342	Potato	extracellular	39.37	37.92

Protein Annotations

EntrezGene:102598951	Gene3D:2.60.120.200	MapMan:50.2.4	EMBL:AM231401	InterPro:Beta_glucanase	ProteinID:CAJ77496
ProteinID:CAJ77496.1	InterPro:ConA-like_dom_sf	InterPro:GH16	InterPro:GH16_AS	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975
GO:GO:0006073	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010411	GO:GO:0016043
GO:GO:0016740	GO:GO:0016757	GO:GO:0016762	GO:GO:0016787	GO:GO:0016798	GO:GO:0030312
GO:GO:0042546	GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757	RefSeq:NP_001274880.1	PFAM:PF00722
PFAM:PF06955	EnsemblPlantsGene:PGSC0003DMG400017299	PGSC:PGSC0003DMG400017299	EnsemblPlants:PGSC0003DMT400044562	PIRSF:PIRSF005604	PRINTS:PR00737
ScanProsite:PS01034	PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF62	UniProt:Q2HPL9	SUPFAM:SSF49899
SignalP:SignalP-noTM	UniParc:UPI00006A8454	InterPro:XET_C	InterPro:XTH	SEG:seg	:

Description

Xyloglucan endotransglycosylase [Source:PGSC_GENE;Acc:PGSC0003DMG400017299]

Coordinates

chr7:+:51084611..51085893

Molecular Weight (calculated)

32342.8 Da

IEP (calculated)

8.839

GRAVY (calculated)

-0.412

Length

287 amino acids

Sequence
(BLAST)

001: MLLQLSLLAL VLLSPVWADN FYQDATVTFG DQRAQIQDGG RLLALSLDKI SGSGFQSKNE YLFGRFDMQL KLVPGNSAGT VTTFLLSSQG AGHDEIDFEF
101: LGNSSGKPYT VHTNVYSQGK GNKEQQFRLW FDPTSSFHTY SIVWNSQRII FLVDNIPIRV FNNHEALGVA FPKNQAMRVY ASLWNADDWA TQGGRVKTDW
201: SMAPFTASYR NFNTNACVWS AATSTSSCGG SKTESVNNDQ TWQSQQLNAN GRNRVRWVQQ KYMIYNYCAD ANRFSQGFSP ECKRSRF

Best Arabidopsis Sequence Match ( AT3G23730.1 )
(BLAST)

001: MGRILNRTVL MTLLVVTMAG TAFSGSFNEE FDLTWGEHRG KIFSGGKMLS LSLDRVSGSG FKSKKEYLFG RIDMQLKLVA GNSAGTVTAY YLSSEGPTHD
101: EIDFEFLGNE TGKPYVLHTN VFAQGKGNRE QQFYLWFDPT KNFHTYSLVW RPQHIIFMVD NVPIRVFNNA EQLGVPFPKN QPMKIYSSLW NADDWATRGG
201: LVKTDWSKAP FTAYYRGFNA AACTVSSGSS FCDPKFKSSF TNGESQVANE LNAYGRRRLR WVQKYFMIYD YCSDLKRFPQ GFPPECRKSR V

Arabidopsis Description

XTH16Probable xyloglucan endotransglucosylase/hydrolase protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG58]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.