Factsheet for PGSC0003DMT400005342

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g080160.2.1	Tomato	extracellular	96.64	96.64
PGSC0003DMT400061841	Potato	extracellular	71.81	72.54
KRH35587	Soybean	extracellular	67.45	66.56
KRG91233	Soybean	extracellular	66.78	66.11
Bra019846.1-P	Field mustard	extracellular	65.44	65.22
CDX97967	Canola	extracellular	65.44	65.22
CDY49788	Canola	extracellular	64.77	64.55
VIT_10s0116g00520.t01	Wine grape	extracellular, vacuole	64.43	64.0
AT1G11545.1	Thale cress	extracellular	63.42	61.97
GSMUA_Achr1P08500_001	Banana	extracellular	55.7	61.25
TraesCS2D01G224300.1	Wheat	extracellular	57.05	55.92
TraesCS2B01G244500.1	Wheat	extracellular	56.71	55.23
KXG36371	Sorghum	extracellular	57.05	53.29
Zm00001d021667_P001	Maize	plasma membrane	56.71	51.21
PGSC0003DMT400028324	Potato	vacuole	46.31	46.78
HORVU2Hr1G045330.4	Barley	extracellular, vacuole	56.38	45.28
PGSC0003DMT400055138	Potato	extracellular	44.63	45.08
PGSC0003DMT400005591	Potato	extracellular	44.63	44.93
PGSC0003DMT400036329	Potato	extracellular	42.28	44.68
PGSC0003DMT400067358	Potato	extracellular	44.3	44.59
PGSC0003DMT400026398	Potato	extracellular	42.28	44.52
PGSC0003DMT400013128	Potato	extracellular	23.83	44.38
PGSC0003DMT400063689	Potato	vacuole	43.96	44.26
PGSC0003DMT400048241	Potato	extracellular	42.28	44.21
PGSC0003DMT400005949	Potato	cytosol	27.85	42.78
PGSC0003DMT400038413	Potato	extracellular	40.94	42.66
PGSC0003DMT400048242	Potato	extracellular	39.26	41.94
PGSC0003DMT400056316	Potato	extracellular	38.59	41.67
PGSC0003DMT400020314	Potato	cytosol, nucleus, peroxisome	38.26	41.61
PGSC0003DMT400011902	Potato	extracellular	38.93	41.58
PGSC0003DMT400079856	Potato	extracellular	38.93	40.42
PGSC0003DMT400020122	Potato	extracellular	39.26	40.34
PGSC0003DMT400044559	Potato	extracellular	39.26	40.34
PGSC0003DMT400044562	Potato	extracellular	37.92	39.37
PGSC0003DMT400048240	Potato	golgi	39.93	34.8

Protein Annotations

EntrezGene:102584396	Gene3D:2.60.120.200	MapMan:50.2.4	InterPro:Beta_glucanase	InterPro:ConA-like_dom_sf	InterPro:GH16
InterPro:GH16_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576
GO:GO:0005618	GO:GO:0005623	GO:GO:0005975	GO:GO:0006073	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010411	GO:GO:0016043	GO:GO:0016740	GO:GO:0016762	GO:GO:0016787
GO:GO:0016798	GO:GO:0030312	GO:GO:0042546	GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757
UniProt:M0ZPQ7	PFAM:PF00722	PFAM:PF06955	EnsemblPlantsGene:PGSC0003DMG400002084	PGSC:PGSC0003DMG400002084	EnsemblPlants:PGSC0003DMT400005342
PIRSF:PIRSF005604	PRINTS:PR00737	ScanProsite:PS01034	PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF1
SUPFAM:SSF49899	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000295C47E	InterPro:XET_C	RefSeq:XP_006348078.1
InterPro:XTH	:	:	:	:	:

Description

Xyloglucan endotransglucosylase/hydrolase protein A [Source:PGSC_GENE;Acc:PGSC0003DMG400002084]

Coordinates

chr2:-:36002942..36004867

Molecular Weight (calculated)

34464.3 Da

IEP (calculated)

6.704

GRAVY (calculated)

-0.401

Length

298 amino acids

Sequence
(BLAST)

001: MESNASSMAH LFLILSVMFT LFSSSNGVVK GAFEENFSKS CPGTHFKTSE DGQIWYLTLD QVSDCGFITK QSYRFGWYST KLKLVGGDSA GVVTAFYMCS
101: EVEAGPLRDE IDFEFLGNRT GQPYLIQTNV YNNGSGGREM RHQLWFDPTL DFHTYSILWN SHQIVFFVDQ VPIRVYKNAN HTNNFFPALR PMYVFSSIWN
201: ADNWATRGGL DKINWKNAPF VASYKDFTID ACPWKNPYPA CASSTTQHWW DQNNAWHLSS KEKIDYAWVQ RNFVVYNYCQ DTVRNKYKPQ ECWLNPLD

Best Arabidopsis Sequence Match ( AT1G11545.1 )
(BLAST)

001: METERRIITS CSAMTALFLF MTALMASSSI AATPTQSFED NFNIMWSENH FTTSDDGEIW NLSLDNDTGC GFQTKHMYRF GWFSMKLKLV GGDSAGVVTA
101: YYMCSENGAG PERDEIDFEF LGNRTGQPYI IQTNVYKNGT GNREMRHSLW FDPTKDYHTY SILWNNHQLV FFVDRVPIRV YKNSDKVPNN DFFPNQKPMY
201: LFSSIWNADD WATRGGLEKT DWKKAPFVSS YKDFAVEGCR WKDPFPACVS TTTENWWDQY DAWHLSKTQK MDYAWVQRNL VVYDYCKDSE RFPTLPWECS
301: ISPWA

Arabidopsis Description

XTH8Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178W0W2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.