Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- peroxisome 2
- extracellular 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400020122 | Potato | extracellular | 97.81 | 92.41 |
| Solyc12g011030.1.1 | Tomato | nucleus | 85.04 | 84.12 |
| PGSC0003DMT400044559 | Potato | extracellular | 81.39 | 76.9 |
| PGSC0003DMT400005949 | Potato | cytosol | 50.73 | 71.65 |
| PGSC0003DMT400079856 | Potato | extracellular | 72.63 | 69.34 |
| PGSC0003DMT400044562 | Potato | extracellular | 71.53 | 68.29 |
| PGSC0003DMT400056316 | Potato | extracellular | 61.68 | 61.23 |
| PGSC0003DMT400011902 | Potato | extracellular | 59.49 | 58.42 |
| PGSC0003DMT400048242 | Potato | extracellular | 58.76 | 57.71 |
| PGSC0003DMT400038413 | Potato | extracellular | 59.85 | 57.34 |
| PGSC0003DMT400036329 | Potato | extracellular | 58.76 | 57.09 |
| PGSC0003DMT400048241 | Potato | extracellular | 58.39 | 56.14 |
| KRH73676 | Soybean | extracellular | 52.55 | 50.88 |
| KRH14468 | Soybean | extracellular | 51.82 | 49.31 |
| KRG98913 | Soybean | vacuole | 49.27 | 46.88 |
| PGSC0003DMT400048240 | Potato | golgi | 57.3 | 45.91 |
| PGSC0003DMT400028324 | Potato | vacuole | 48.54 | 45.08 |
| PGSC0003DMT400005591 | Potato | extracellular | 48.54 | 44.93 |
| PGSC0003DMT400067358 | Potato | extracellular | 48.18 | 44.59 |
| PGSC0003DMT400055138 | Potato | extracellular | 47.81 | 44.41 |
| PGSC0003DMT400026398 | Potato | extracellular | 44.53 | 43.11 |
| PGSC0003DMT400063689 | Potato | vacuole | 46.35 | 42.91 |
| PGSC0003DMT400013128 | Potato | extracellular | 24.09 | 41.25 |
| PGSC0003DMT400061841 | Potato | extracellular | 42.34 | 39.32 |
| PGSC0003DMT400005342 | Potato | extracellular | 41.61 | 38.26 |
Protein Annotations
| EntrezGene:102594670 | Gene3D:2.60.120.200 | MapMan:50.2.4 | InterPro:Beta_glucanase | InterPro:ConA-like_dom_sf | InterPro:GH16 |
| InterPro:GH16_AS | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005575 | GO:GO:0005576 |
| GO:GO:0005618 | GO:GO:0005623 | GO:GO:0005975 | GO:GO:0006073 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0010411 | GO:GO:0016043 | GO:GO:0016740 | GO:GO:0016762 | GO:GO:0016787 |
| GO:GO:0016798 | GO:GO:0030312 | GO:GO:0042546 | GO:GO:0048046 | GO:GO:0071555 | InterPro:IPR000757 |
| UniProt:M1ADA0 | PFAM:PF00722 | PFAM:PF06955 | EnsemblPlantsGene:PGSC0003DMG400007854 | PGSC:PGSC0003DMG400007854 | EnsemblPlants:PGSC0003DMT400020314 |
| PIRSF:PIRSF005604 | PRINTS:PR00737 | ScanProsite:PS01034 | PFscan:PS51762 | PANTHER:PTHR31062 | PANTHER:PTHR31062:SF62 |
| SUPFAM:SSF49899 | UniParc:UPI000294D84B | InterPro:XET_C | RefSeq:XP_006350014.1 | InterPro:XTH | SEG:seg |
Description
Xyloglucan endotransglucosylase-hydrolase XTH9 [Source:PGSC_GENE;Acc:PGSC0003DMG400007854]
Coordinates
chr12:-:1293374..1294778
Molecular Weight (calculated)
30940.2 Da
IEP (calculated)
8.463
GRAVY (calculated)
-0.511
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIQLLASAG NFYRDVDITW GEGRGKIQEG GRGLALSLDK LSGSGFQSKN EFLFGRFDMQ LKLVPENSAG TVTTFFLSSQ GEGHDEIDFE FLGNVSGQPY
101: TIHTNVYTQG KGNKEQQFHL WFDPTAAFHT YTIVWNPHRI VFLVDNSPIR VFNNHESIGI PFPKSQAMKV YCSLWNADEW ATQGGRVKTD WALAPFTAYY
201: RNINIDGCAV SSGTSSCKSI GSTNNAKPWQ THELDGKGRN RLRWVQSKHM VYNYCADSKR FPQGFSEECK RSRF
101: TIHTNVYTQG KGNKEQQFHL WFDPTAAFHT YTIVWNPHRI VFLVDNSPIR VFNNHESIGI PFPKSQAMKV YCSLWNADEW ATQGGRVKTD WALAPFTAYY
201: RNINIDGCAV SSGTSSCKSI GSTNNAKPWQ THELDGKGRN RLRWVQSKHM VYNYCADSKR FPQGFSEECK RSRF
001: MGRILNRTVL MTLLVVTMAG TAFSGSFNEE FDLTWGEHRG KIFSGGKMLS LSLDRVSGSG FKSKKEYLFG RIDMQLKLVA GNSAGTVTAY YLSSEGPTHD
101: EIDFEFLGNE TGKPYVLHTN VFAQGKGNRE QQFYLWFDPT KNFHTYSLVW RPQHIIFMVD NVPIRVFNNA EQLGVPFPKN QPMKIYSSLW NADDWATRGG
201: LVKTDWSKAP FTAYYRGFNA AACTVSSGSS FCDPKFKSSF TNGESQVANE LNAYGRRRLR WVQKYFMIYD YCSDLKRFPQ GFPPECRKSR V
101: EIDFEFLGNE TGKPYVLHTN VFAQGKGNRE QQFYLWFDPT KNFHTYSLVW RPQHIIFMVD NVPIRVFNNA EQLGVPFPKN QPMKIYSSLW NADDWATRGG
201: LVKTDWSKAP FTAYYRGFNA AACTVSSGSS FCDPKFKSSF TNGESQVANE LNAYGRRRLR WVQKYFMIYD YCSDLKRFPQ GFPPECRKSR V
Arabidopsis Description
XTH16Probable xyloglucan endotransglucosylase/hydrolase protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG58]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.