Factsheet for Solyc12g011030.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020314	Potato	cytosol, nucleus, peroxisome	84.12	85.04
PGSC0003DMT400020122	Potato	extracellular	88.45	84.48
Solyc07g055990.2.1	Tomato	nucleus	71.84	68.62
Solyc12g017240.1.1	Tomato	extracellular	65.7	62.98
Solyc07g056000.2.1	Tomato	extracellular, nucleus	64.26	62.02
Solyc12g098610.1.1	Tomato	nucleus	52.71	55.94
Solyc09g092520.2.1	Tomato	nucleus	54.51	54.71
Solyc03g093080.2.1	Tomato	extracellular	55.23	53.5
Solyc03g093110.2.1	Tomato	extracellular	54.87	52.96
Solyc03g093130.2.1	Tomato	extracellular	54.87	52.96
Solyc03g093120.2.1	Tomato	extracellular	54.51	52.8
Solyc07g009380.2.1	Tomato	extracellular, nucleus	51.62	52.0
Solyc07g006860.2.1	Tomato	extracellular	53.07	51.58
Solyc07g006870.2.1	Tomato	extracellular, vacuole	51.99	51.06
Solyc05g046290.2.1	Tomato	extracellular	52.35	50.35
KRH73676	Soybean	extracellular	45.85	44.88
KRH14468	Soybean	extracellular	45.13	43.4
Solyc12g007250.1.1	Tomato	extracellular	45.49	43.3
Solyc12g007260.1.1	Tomato	extracellular	45.49	43.15
Solyc07g006850.1.1	Tomato	golgi	51.99	42.11
Solyc12g007270.1.1	Tomato	extracellular	44.4	41.98
KRG98913	Soybean	vacuole	43.32	41.67
Solyc02g091920.2.1	Tomato	nucleus	41.88	39.32
Solyc07g052980.2.1	Tomato	extracellular	41.88	39.19
Solyc11g040140.1.1	Tomato	extracellular	42.24	39.0
Solyc11g065600.1.1	Tomato	nucleus	40.07	37.88
Solyc01g099630.2.1	Tomato	extracellular	40.07	37.5
Solyc03g098430.2.1	Tomato	extracellular	37.55	36.75
Solyc01g106650.2.1	Tomato	extracellular, vacuole	37.18	35.15
Solyc03g031800.2.1	Tomato	extracellular	37.18	34.92
Solyc02g080160.2.1	Tomato	extracellular	37.55	34.9
Solyc10g005350.2.1	Tomato	extracellular	36.1	34.72

Protein Annotations

Gene3D:2.60.120.200	MapMan:50.2.4	InterPro:Beta_glucanase	InterPro:ConA-like_dom_sf	InterPro:GH16	InterPro:GH16_AS
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618
GO:GO:0005623	GO:GO:0005975	GO:GO:0006073	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010411	GO:GO:0016043	GO:GO:0016740	GO:GO:0016762	GO:GO:0016787	GO:GO:0016798
GO:GO:0030312	GO:GO:0042546	GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757	UniProt:K4DCI9
PFAM:PF00722	PFAM:PF06955	PIRSF:PIRSF005604	PRINTS:PR00737	ScanProsite:PS01034	PFscan:PS51762
PANTHER:PTHR31062	PANTHER:PTHR31062:SF62	SUPFAM:SSF49899	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc12g011030.1	EnsemblPlants:Solyc12g011030.1.1
TMHMM:TMhelix	UniParc:UPI000276A180	InterPro:XET_C	InterPro:XTH	SEG:seg	:

Description

Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:K4DCI9]

Coordinates

chr12:+:3892612..3893717

Molecular Weight (calculated)

31385.5 Da

IEP (calculated)

9.301

GRAVY (calculated)

-0.299

Length

277 amino acids

Sequence
(BLAST)

001: MSSKFSSTLL LLISILMSIQ LLASAGNFYR DVDITWGEGR GKIQEGGRGL ALSLDKLSGS GFQSKNEYLF GRFDMQLKLV PKNSAGTVTT FFLSSQGEGH
101: DEIDFEFLGN VSGQPYTIHT NVYTQGKGNK EQQFHLWFDP TAAFHTYTIV WNPHRIVFLV DNSPIRVFNN HESMGIPFPK SQAMKVYCSL WNIGHLHHSL
201: LITETLTLMV VQYHQVTSSC KSIGSINNAK PWQTHELDGK GRNRLRWVQT KHMVYNYCAD SKRFPQGFSA ECKSSRF

Best Arabidopsis Sequence Match ( AT3G23730.1 )
(BLAST)

001: MGRILNRTVL MTLLVVTMAG TAFSGSFNEE FDLTWGEHRG KIFSGGKMLS LSLDRVSGSG FKSKKEYLFG RIDMQLKLVA GNSAGTVTAY YLSSEGPTHD
101: EIDFEFLGNE TGKPYVLHTN VFAQGKGNRE QQFYLWFDPT KNFHTYSLVW RPQHIIFMVD NVPIRVFNNA EQLGVPFPKN QPMKIYSSLW NADDWATRGG
201: LVKTDWSKAP FTAYYRGFNA AACTVSSGSS FCDPKFKSSF TNGESQVANE LNAYGRRRLR WVQKYFMIYD YCSDLKRFPQ GFPPECRKSR V

Arabidopsis Description

XTH16Probable xyloglucan endotransglucosylase/hydrolase protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG58]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.