Factsheet for Solyc02g091920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055138	Potato	extracellular	97.29	97.29
GSMUA_Achr8P26470_001	Banana	extracellular	74.58	76.92
KRH58172	Soybean	extracellular, vacuole	75.59	76.63
GSMUA_Achr3P26220_001	Banana	extracellular	74.24	76.57
KRH04364	Soybean	extracellular	75.59	76.37
GSMUA_Achr8P05120_001	Banana	extracellular	73.22	75.52
KRH77174	Soybean	extracellular	75.59	75.34
KRH28311	Soybean	extracellular, vacuole	74.92	74.41
AT4G37800.1	Thale cress	extracellular, vacuole	72.88	73.38
Bra024415.1-P	Field mustard	extracellular	70.51	72.98
CDY08756	Canola	extracellular	70.51	72.98
CDY45623	Canola	extracellular	70.51	72.98
CDX72656	Canola	extracellular, vacuole	71.53	72.26
AT5G65730.1	Thale cress	extracellular	71.19	71.92
Bra017855.1-P	Field mustard	extracellular, vacuole	71.19	71.92
CDY31620	Canola	extracellular, vacuole	71.19	71.67
GSMUA_Achr1P10380_001	Banana	extracellular, vacuole	66.1	66.1
Solyc03g098430.2.1	Tomato	extracellular	47.8	49.82
Solyc11g040140.1.1	Tomato	extracellular	50.51	49.67
Solyc07g052980.2.1	Tomato	extracellular	49.49	49.32
Solyc12g098610.1.1	Tomato	nucleus	43.39	49.04
Solyc07g009380.2.1	Tomato	extracellular, nucleus	44.75	48.0
Solyc09g092520.2.1	Tomato	nucleus	44.75	47.83
Solyc11g065600.1.1	Tomato	nucleus	47.46	47.78
Solyc07g006860.2.1	Tomato	extracellular	46.1	47.72
Solyc01g099630.2.1	Tomato	extracellular	47.46	47.3
Solyc07g055990.2.1	Tomato	nucleus	46.44	47.24
Solyc07g006870.2.1	Tomato	extracellular, vacuole	45.08	47.16
Solyc05g046290.2.1	Tomato	extracellular	45.76	46.88
Solyc03g093120.2.1	Tomato	extracellular	45.42	46.85
Solyc03g093080.2.1	Tomato	extracellular	45.42	46.85
Solyc03g093130.2.1	Tomato	extracellular	45.08	46.34
Solyc03g093110.2.1	Tomato	extracellular	44.75	45.99
Solyc10g005350.2.1	Tomato	extracellular	44.75	45.83
Solyc03g031800.2.1	Tomato	extracellular	45.76	45.76
Solyc07g056000.2.1	Tomato	extracellular, nucleus	44.41	45.64
Solyc12g017240.1.1	Tomato	extracellular	44.41	45.33
Solyc02g080160.2.1	Tomato	extracellular	45.76	45.3
Solyc12g007270.1.1	Tomato	extracellular	44.75	45.05
Solyc01g106650.2.1	Tomato	extracellular, vacuole	44.41	44.71
Solyc12g007260.1.1	Tomato	extracellular	43.39	43.84
Solyc12g007250.1.1	Tomato	extracellular	42.37	42.96
Solyc12g011030.1.1	Tomato	nucleus	39.32	41.88
Solyc07g006850.1.1	Tomato	golgi	46.1	39.77

Protein Annotations

Gene3D:2.60.120.200	MapMan:50.2.4	InterPro:ConA-like_dom_sf	InterPro:GH16	InterPro:GH16_AS	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0005975	GO:GO:0006073	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009414
GO:GO:0009628	GO:GO:0009987	GO:GO:0010411	GO:GO:0016043	GO:GO:0016740	GO:GO:0016762
GO:GO:0016787	GO:GO:0016798	GO:GO:0030312	GO:GO:0042546	GO:GO:0048046	GO:GO:0071555
InterPro:IPR000757	UniProt:K4BCZ0	PFAM:PF00722	PFAM:PF06955	PIRSF:PIRSF005604	ScanProsite:PS01034
PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF48	SUPFAM:SSF49899	EnsemblPlantsGene:Solyc02g091920.2	EnsemblPlants:Solyc02g091920.2.1
TMHMM:TMhelix	UniParc:UPI0002767D4E	InterPro:XET_C	InterPro:XTH	:	:

Description

Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:K4BCZ0]

Coordinates

chr2:+:53134100..53135731

Molecular Weight (calculated)

33481.5 Da

IEP (calculated)

7.821

GRAVY (calculated)

-0.383

Length

295 amino acids

Sequence
(BLAST)

001: MATLTCSSLK NSAFVLILVY ALTFSFSLVS ARPATFLQDF KIAWSDSHIK QLDGGRGIQL ILDQNSGCGF ASRSKYLFGR VSMKIKLVPG DSAGTVTAFY
101: MNSDTDNVRD ELDFEFLGNR TGQPYTVQTN VYVHGKGDKE QRVNLWFDPS ADFHTYTIFW NHHQAVFSVD GIPIRVYKNN EAKGIPFPKF QPMGVYSTLW
201: EADDWATRGG LEKINWSKSP FYAYYKDFDI EGCAMPGPAN CASNPSNWWE GPSYQQLSPV QARQYRWVRM NHMIYDYCTD KSRNPVPPPE CRAGI

Best Arabidopsis Sequence Match ( AT4G37800.1 )
(BLAST)

001: MVVSLFSSRN VFYTLSLCLF AALYQPVMSR PAKFEDDFRI AWSDTHITQI DGGRAIQLKL DPSSGCGFAS KKQYLFGRVS MKIKLIPGDS AGTVTAFYMN
101: SDTDSVRDEL DFEFLGNRSG QPYTVQTNVF AHGKGDREQR VNLWFDPSRD FHEYAISWNH LRIVFYVDNV PIRVYKNNEA RKVPYPRFQP MGVYSTLWEA
201: DDWATRGGIE KINWSRAPFY AYYKDFDIEG CPVPGPADCP ANSKNWWEGS AYHQLSPVEA RSYRWVRVNH MVYDYCTDKS RFPVPPPECS AGI

Arabidopsis Description

XTH7Probable xyloglucan endotransglucosylase/hydrolase protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LER3]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.