Factsheet for Solyc07g055990.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044559	Potato	extracellular	94.14	94.14
Solyc12g011030.1.1	Tomato	nucleus	68.62	71.84
Solyc07g056000.2.1	Tomato	extracellular, nucleus	68.28	68.99
Solyc12g017240.1.1	Tomato	extracellular	67.59	67.82
Solyc12g098610.1.1	Tomato	nucleus	54.83	60.92
Solyc09g092520.2.1	Tomato	nucleus	56.9	59.78
Solyc03g093080.2.1	Tomato	extracellular	58.28	59.09
Solyc03g093110.2.1	Tomato	extracellular	58.28	58.88
Solyc03g093120.2.1	Tomato	extracellular	57.93	58.74
Solyc07g006860.2.1	Tomato	extracellular	57.59	58.6
Solyc03g093130.2.1	Tomato	extracellular	57.93	58.54
Solyc07g009380.2.1	Tomato	extracellular, nucleus	54.83	57.82
Solyc07g006870.2.1	Tomato	extracellular, vacuole	55.52	57.09
Solyc05g046290.2.1	Tomato	extracellular	53.79	54.17
KRH73676	Soybean	extracellular	49.31	50.53
KRH14468	Soybean	extracellular	49.66	50.0
Solyc12g007250.1.1	Tomato	extracellular	48.28	48.11
KRG98913	Soybean	vacuole	47.59	47.92
Solyc12g007270.1.1	Tomato	extracellular	48.28	47.78
Solyc07g006850.1.1	Tomato	golgi	56.21	47.66
Solyc12g007260.1.1	Tomato	extracellular	47.24	46.92
Solyc02g091920.2.1	Tomato	nucleus	47.24	46.44
Solyc11g040140.1.1	Tomato	extracellular	46.9	45.33
Solyc07g052980.2.1	Tomato	extracellular	46.21	45.27
Solyc11g065600.1.1	Tomato	nucleus	44.14	43.69
Solyc03g098430.2.1	Tomato	extracellular	42.41	43.46
Solyc01g099630.2.1	Tomato	extracellular	43.79	42.91
Solyc10g005350.2.1	Tomato	extracellular	40.34	40.62
Solyc01g106650.2.1	Tomato	extracellular, vacuole	40.34	39.93
Solyc03g031800.2.1	Tomato	extracellular	39.66	38.98
Solyc02g080160.2.1	Tomato	extracellular	40.0	38.93

Protein Annotations

Gene3D:2.60.120.200	MapMan:50.2.4	InterPro:Beta_glucanase	InterPro:ConA-like_dom_sf	InterPro:GH16	InterPro:GH16_AS
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618
GO:GO:0005623	GO:GO:0005975	GO:GO:0006073	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010411	GO:GO:0016043	GO:GO:0016740	GO:GO:0016762	GO:GO:0016787	GO:GO:0016798
GO:GO:0030312	GO:GO:0042546	GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757	UniProt:K4CGD2
PFAM:PF00722	PFAM:PF06955	PIRSF:PIRSF005604	PRINTS:PR00737	ScanProsite:PS01034	PFscan:PS51762
PANTHER:PTHR31062	PANTHER:PTHR31062:SF62	SUPFAM:SSF49899	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc07g055990.2	EnsemblPlants:Solyc07g055990.2.1
TMHMM:TMhelix	UniParc:UPI000276AE5F	InterPro:XET_C	InterPro:XTH	SEG:seg	:

Description

Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:K4CGD2]

Coordinates

chr7:+:63891570..63893537

Molecular Weight (calculated)

32612.2 Da

IEP (calculated)

8.197

GRAVY (calculated)

-0.449

Length

290 amino acids

Sequence
(BLAST)

001: MANSHLLLIS IVLMGNLVAV LAAGNFNDLT EITWGDGRGK ILDGGKGLSL SLDNYSGSGF QSKNEYLYGR FDMQLKLVPK NSAGTVTTFF LSSQGEGHDE
101: IDFEFLGNVT GEPYTVHTNV YSQGKGNKEQ QFHLWFDPTA AFHTYTIVWN ANRIVFLVDQ IPIRVYNNHE SIGIAYPKSQ PMKVYCSLWN ADEWATQGGR
201: VKTDWSQAPF TAYYRNINID GCVVKSGASS CASRSTESTN SAKSWETHEL DAKGRNRVRW VQSKHMVYNY CADSKRFPQG YSQECKRSRF

Best Arabidopsis Sequence Match ( AT3G23730.1 )
(BLAST)

001: MGRILNRTVL MTLLVVTMAG TAFSGSFNEE FDLTWGEHRG KIFSGGKMLS LSLDRVSGSG FKSKKEYLFG RIDMQLKLVA GNSAGTVTAY YLSSEGPTHD
101: EIDFEFLGNE TGKPYVLHTN VFAQGKGNRE QQFYLWFDPT KNFHTYSLVW RPQHIIFMVD NVPIRVFNNA EQLGVPFPKN QPMKIYSSLW NADDWATRGG
201: LVKTDWSKAP FTAYYRGFNA AACTVSSGSS FCDPKFKSSF TNGESQVANE LNAYGRRRLR WVQKYFMIYD YCSDLKRFPQ GFPPECRKSR V

Arabidopsis Description

XTH16Probable xyloglucan endotransglucosylase/hydrolase protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG58]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.