Factsheet for Solyc12g007270.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g007260.1.1	Tomato	extracellular	67.92	68.15
Solyc12g007250.1.1	Tomato	extracellular	66.89	67.35
GSMUA_Achr8P19740_001	Banana	extracellular	55.63	60.59
GSMUA_Achr3P03390_001	Banana	extracellular	58.36	58.16
Solyc12g098610.1.1	Tomato	nucleus	48.81	54.79
Solyc03g093120.2.1	Tomato	extracellular	53.24	54.55
Solyc03g093130.2.1	Tomato	extracellular	53.24	54.36
Solyc03g093110.2.1	Tomato	extracellular	53.24	54.36
Solyc03g093080.2.1	Tomato	extracellular	52.9	54.2
Solyc07g006860.2.1	Tomato	extracellular	51.54	52.98
GSMUA_Achr7P10940_001	Banana	extracellular	49.83	52.52
Solyc07g009380.2.1	Tomato	extracellular, nucleus	49.15	52.36
Solyc09g092520.2.1	Tomato	nucleus	49.15	52.17
Solyc05g046290.2.1	Tomato	extracellular	50.85	51.74
Solyc07g006870.2.1	Tomato	extracellular, vacuole	47.1	48.94
OQU75596	Sorghum	cytosol, extracellular, plastid	26.96	48.77
Solyc07g055990.2.1	Tomato	nucleus	47.78	48.28
Solyc07g056000.2.1	Tomato	extracellular, nucleus	46.42	47.39
TraesCS7A01G331200.1	Wheat	vacuole	46.08	47.37
EER89799	Sorghum	vacuole	46.76	46.6
Solyc12g017240.1.1	Tomato	extracellular	45.73	46.37
TraesCS7B01G242900.1	Wheat	extracellular, vacuole	45.73	46.37
TraesCS7D01G339400.1	Wheat	extracellular	45.73	46.37
EES04926	Sorghum	extracellular, vacuole	46.08	45.76
EES04929	Sorghum	extracellular, vacuole	45.05	45.52
Zm00001d053320_P001	Maize	vacuole	45.05	45.36
Zm00001d046007_P001	Maize	extracellular	45.39	45.08
TraesCS2D01G498400.1	Wheat	extracellular	44.37	44.98
Zm00001d015977_P001	Maize	mitochondrion	46.08	44.85
Solyc02g091920.2.1	Tomato	nucleus	45.05	44.75
Solyc12g011030.1.1	Tomato	nucleus	41.98	44.4
TraesCS2D01G498700.1	Wheat	extracellular, vacuole	43.69	44.29
TraesCS2D01G498600.1	Wheat	extracellular, vacuole	43.69	44.29
TraesCS2A01G498200.1	Wheat	extracellular	43.69	44.29
TraesCS2A01G089000.1	Wheat	extracellular	42.66	44.01
TraesCS2A01G498400.1	Wheat	vacuole	43.34	43.94
TraesCS2D01G498500.2	Wheat	vacuole	43.34	43.94
TraesCS2B01G526500.1	Wheat	vacuole	43.34	43.94
TraesCS2A01G498300.1	Wheat	vacuole	43.34	43.94
TraesCS2B01G104700.1	Wheat	extracellular	42.66	43.86
HORVU2Hr1G111060.1	Barley	vacuole	37.54	43.65
TraesCS2D01G086800.1	Wheat	extracellular	41.98	43.46
Solyc11g065600.1.1	Tomato	nucleus	43.34	43.34
TraesCS2D01G498800.1	Wheat	vacuole	42.66	43.25
Solyc03g098430.2.1	Tomato	extracellular	41.64	43.11
TraesCS2B01G526600.1	Wheat	extracellular	42.66	42.81
TraesCS2A01G498500.1	Wheat	vacuole	42.32	42.47
Solyc11g040140.1.1	Tomato	extracellular	43.0	42.0
Solyc01g099630.2.1	Tomato	extracellular	42.32	41.89
Solyc07g052980.2.1	Tomato	extracellular	42.32	41.89
HORVU7Hr1G081740.1	Barley	extracellular, vacuole	46.08	41.54
HORVU2Hr1G014530.3	Barley	extracellular	43.34	40.71
Solyc10g005350.2.1	Tomato	extracellular	39.59	40.28
Solyc07g006850.1.1	Tomato	golgi	46.76	40.06
Solyc02g080160.2.1	Tomato	extracellular	40.61	39.93
Solyc03g031800.2.1	Tomato	extracellular	39.25	38.98
Solyc01g106650.2.1	Tomato	extracellular, vacuole	37.2	37.2
HORVU2Hr1G111030.2	Barley	vacuole	39.59	35.26

Protein Annotations

Gene3D:2.60.120.200	MapMan:50.2.4	InterPro:ConA-like_dom_sf	InterPro:GH16	InterPro:GH16_AS	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0005975	GO:GO:0006073	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010411
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016740	GO:GO:0016762	GO:GO:0016787
GO:GO:0016798	GO:GO:0030312	GO:GO:0042546	GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757
UniProt:K4DBR4	PFAM:PF00722	PFAM:PF06955	PIRSF:PIRSF005604	ScanProsite:PS01034	PFscan:PS51762
PANTHER:PTHR31062	PANTHER:PTHR31062:SF55	SUPFAM:SSF49899	EnsemblPlantsGene:Solyc12g007270.1	EnsemblPlants:Solyc12g007270.1.1	TMHMM:TMhelix
UniParc:UPI00027693F4	InterPro:XET_C	InterPro:XTH	:	:	:

Description

Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:K4DBR4]

Coordinates

chr12:+:1685022..1687362

Molecular Weight (calculated)

33120.7 Da

IEP (calculated)

5.546

GRAVY (calculated)

-0.312

Length

293 amino acids

Sequence
(BLAST)

001: MGSSLVLSLA NLLIISTIVS FGSLVMVNGI FSDNMYINWG SHHSWMQGDD LQLVLDQSSG SGVQSKGTFL FGSIEMQIKL VPGNSAGTVT AYYLSSTGDK
101: HDEIDFEFLG NVSGQPYIIH TNIFTQGAGG REQQFYPWFD PTADYHNYTI HWNPNAVVWY VDDIPIRVYK NYQSQDIPYP NAQAMGVYSS LWNADSWATR
201: GGLVKCDWTN APFIAKYRNF APRACAWNGP ISISQCATQT PSNWYTAPEY NQLSYAKQGQ MEWVRSNYMI YDYCKDTKRF NGQFPGECFK PQF

Best Arabidopsis Sequence Match ( AT4G28850.1 )
(BLAST)

001: MAGLQAKTLM FVLAAALATL GRTFVEADFS KNFIVTWGKD HMFMNGTNLR LVLDKSAGSA IKSKVAHLFG SVEMLIKLVP GNSAGTVAAY YLSSTGSTHD
101: EIDFEFLGNA TGQPYTIHTN LYAQGKGNRE QQFRPWFNPT NGFHNYTIHW NPSEVVWFVD GTPIRVFRNY ESEGIAYPNK QGMKVFASLW NAEDWATQGG
201: RVKTNWTLAP FVAEGRRYKA RACLWKGSVS IKQCVDPTIR SNWWTSPSFS QLTASQLTKM QKIRDGFMIY DYCKDTNRFK GVMPPECSKK QF

Arabidopsis Description

XTH26Probable xyloglucan endotransglucosylase/hydrolase protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVV2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.