Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G086800.1 | Wheat | extracellular | 93.33 | 93.99 |
| TraesCS2A01G089000.1 | Wheat | extracellular | 92.98 | 93.31 |
| HORVU2Hr1G014530.3 | Barley | extracellular | 94.39 | 86.22 |
| EES04926 | Sorghum | extracellular, vacuole | 73.68 | 71.19 |
| Zm00001d015977_P001 | Maize | mitochondrion | 74.74 | 70.76 |
| TraesCS2B01G526500.1 | Wheat | vacuole | 62.81 | 61.94 |
| TraesCS7B01G242900.1 | Wheat | extracellular, vacuole | 62.81 | 61.94 |
| TraesCS2B01G526600.1 | Wheat | extracellular | 63.16 | 61.64 |
| GSMUA_Achr8P19740_001 | Banana | extracellular | 46.32 | 49.07 |
| GSMUA_Achr7P10940_001 | Banana | extracellular | 47.37 | 48.56 |
| GSMUA_Achr3P03390_001 | Banana | extracellular | 49.82 | 48.3 |
| TraesCS7B01G327400.1 | Wheat | extracellular | 47.72 | 47.72 |
| TraesCS7B01G327700.1 | Wheat | extracellular | 47.02 | 46.21 |
| TraesCS7B01G327200.1 | Wheat | extracellular | 45.61 | 45.45 |
| TraesCS7B01G326900.1 | Wheat | extracellular | 45.96 | 45.33 |
| AT4G28850.1 | Thale cress | extracellular | 46.32 | 45.21 |
| TraesCS7B01G327000.1 | Wheat | extracellular | 45.61 | 44.52 |
| VIT_11s0016g03480.t01 | Wine grape | extracellular | 45.26 | 44.33 |
| CDY35228 | Canola | extracellular | 45.26 | 44.18 |
| KRH41530 | Soybean | nucleus | 43.86 | 44.17 |
| Bra011066.1-P | Field mustard | extracellular | 44.56 | 43.49 |
| Solyc12g007260.1.1 | Tomato | extracellular | 44.56 | 43.49 |
| CDY06861 | Canola | extracellular | 44.56 | 43.49 |
| Solyc12g007270.1.1 | Tomato | extracellular | 43.86 | 42.66 |
| Solyc12g007250.1.1 | Tomato | extracellular | 42.81 | 41.92 |
| KRH76320 | Soybean | nucleus | 42.11 | 41.52 |
| KRH39331 | Soybean | nucleus | 42.11 | 41.52 |
| TraesCS2B01G454800.1 | Wheat | extracellular | 40.35 | 41.07 |
| TraesCS2B01G454600.1 | Wheat | vacuole | 42.11 | 40.27 |
| TraesCS2B01G059000.1 | Wheat | vacuole | 41.05 | 40.21 |
| TraesCS6B01G368300.1 | Wheat | extracellular | 40.35 | 38.98 |
| TraesCS7B01G327500.1 | Wheat | extracellular, vacuole | 40.0 | 38.13 |
| TraesCS2B01G455400.1 | Wheat | extracellular | 39.65 | 37.29 |
| TraesCS2B01G454500.1 | Wheat | extracellular | 40.35 | 36.98 |
| TraesCS2B01G244500.1 | Wheat | extracellular | 39.65 | 36.93 |
| TraesCS7B01G364300.1 | Wheat | extracellular | 36.49 | 36.62 |
Protein Annotations
| Gene3D:2.60.120.200 | MapMan:50.2.4 | InterPro:ConA-like_dom_sf | InterPro:GH16 | InterPro:GH16_AS | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005623 |
| GO:GO:0005975 | GO:GO:0006073 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010411 |
| GO:GO:0016740 | GO:GO:0016762 | GO:GO:0016787 | GO:GO:0030312 | GO:GO:0042546 | GO:GO:0048046 |
| InterPro:IPR000757 | PFAM:PF00722 | PFAM:PF06955 | PIRSF:PIRSF005604 | ScanProsite:PS01034 | PFscan:PS51762 |
| PANTHER:PTHR31062 | PANTHER:PTHR31062:SF95 | SUPFAM:SSF49899 | SignalP:SignalP-noTM | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS2B01G104700 |
| EnsemblPlants:TraesCS2B01G104700.1 | InterPro:XET_C | InterPro:XTH | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2B:+:65143305..65144553
Molecular Weight (calculated)
31478.7 Da
IEP (calculated)
4.700
GRAVY (calculated)
-0.247
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKPGALVPV IALAFALVLG LVSGGNFYDE CDATWEPQNC WTYDGGNSLS LALVSNSSGS MIRSKRQFIY GTVSTMIQLV KGDSAGTVTT YYTSSVGDDH
101: DEIDFEFLGN ETGQPYTLHT NVYAAGVGGK EMQFRPWFDP TDGYHNYTIS WTPCTIVWYV DGTPIRAFRN YERTHGVAFP TSRPMYAYSS IWAAEDWATQ
201: GGRVRADWTR APFVASYRGI DLDVCECYGG DCVYTCAAAF GACGGLTGEQ RGKMRWVQDK YRIYDYCADH EAGKVPGVEC TLPQY
101: DEIDFEFLGN ETGQPYTLHT NVYAAGVGGK EMQFRPWFDP TDGYHNYTIS WTPCTIVWYV DGTPIRAFRN YERTHGVAFP TSRPMYAYSS IWAAEDWATQ
201: GGRVRADWTR APFVASYRGI DLDVCECYGG DCVYTCAAAF GACGGLTGEQ RGKMRWVQDK YRIYDYCADH EAGKVPGVEC TLPQY
001: MGRILNRTVL MTLLVVTMAG TAFSGSFNEE FDLTWGEHRG KIFSGGKMLS LSLDRVSGSG FKSKKEYLFG RIDMQLKLVA GNSAGTVTAY YLSSEGPTHD
101: EIDFEFLGNE TGKPYVLHTN VFAQGKGNRE QQFYLWFDPT KNFHTYSLVW RPQHIIFMVD NVPIRVFNNA EQLGVPFPKN QPMKIYSSLW NADDWATRGG
201: LVKTDWSKAP FTAYYRGFNA AACTVSSGSS FCDPKFKSSF TNGESQVANE LNAYGRRRLR WVQKYFMIYD YCSDLKRFPQ GFPPECRKSR V
101: EIDFEFLGNE TGKPYVLHTN VFAQGKGNRE QQFYLWFDPT KNFHTYSLVW RPQHIIFMVD NVPIRVFNNA EQLGVPFPKN QPMKIYSSLW NADDWATRGG
201: LVKTDWSKAP FTAYYRGFNA AACTVSSGSS FCDPKFKSSF TNGESQVANE LNAYGRRRLR WVQKYFMIYD YCSDLKRFPQ GFPPECRKSR V
Arabidopsis Description
XTH16Probable xyloglucan endotransglucosylase/hydrolase protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG58]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.