CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 1
extracellular 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89799	Sorghum	vacuole	100.0	55.1
Zm00001d046007_P001	Maize	extracellular	93.83	51.53
TraesCS7A01G331200.1	Wheat	vacuole	62.96	35.79
TraesCS7D01G339400.1	Wheat	extracellular	61.73	34.6
TraesCS7B01G242900.1	Wheat	extracellular, vacuole	61.11	34.26
EES04929	Sorghum	extracellular, vacuole	59.26	33.1
HORVU7Hr1G081740.1	Barley	extracellular, vacuole	64.81	32.31
EES04926	Sorghum	extracellular, vacuole	58.64	32.2
GSMUA_Achr8P19740_001	Banana	extracellular	46.3	27.88
AT4G28850.1	Thale cress	extracellular	49.38	27.4
Solyc12g007260.1.1	Tomato	extracellular	49.38	27.4
CDY06861	Canola	extracellular	48.77	27.05
CDY35228	Canola	extracellular	48.77	27.05
GSMUA_Achr7P10940_001	Banana	extracellular	46.3	26.98
Solyc12g007270.1.1	Tomato	extracellular	48.77	26.96
Bra011066.1-P	Field mustard	extracellular	48.15	26.71
GSMUA_Achr3P03390_001	Banana	extracellular	47.53	26.19
Solyc12g007250.1.1	Tomato	extracellular	46.91	26.12
VIT_11s0016g03480.t01	Wine grape	extracellular	46.3	25.77
KRH41530	Soybean	nucleus	43.83	25.09
KRH39331	Soybean	nucleus	44.44	24.91
KRH76320	Soybean	nucleus	44.44	24.91
EER90302	Sorghum	extracellular	43.83	24.65
EER90303	Sorghum	extracellular, golgi, vacuole	45.68	24.58
EER88885	Sorghum	extracellular	43.83	24.32
EES12802	Sorghum	endoplasmic reticulum, extracellular	41.98	23.94
EER88886	Sorghum	golgi	43.83	22.54
KXG24787	Sorghum	vacuole	40.74	22.53
EES11382	Sorghum	extracellular, vacuole	40.74	22.15
OQU83588	Sorghum	extracellular	41.36	22.11
EES12801	Sorghum	extracellular	41.36	22.11
KXG36371	Sorghum	extracellular	42.59	21.63
EES13579	Sorghum	vacuole	38.27	21.31
EES13578	Sorghum	extracellular	37.65	21.25
EES13577	Sorghum	extracellular	36.42	20.63
EER91282	Sorghum	extracellular, vacuole	39.51	19.88
EES11493	Sorghum	extracellular, vacuole	39.51	19.69

Protein Annotations

Gene3D:2.60.120.200	MapMan:50.2.4	EntrezGene:8155730	UniProt:C6JSQ6	InterPro:ConA-like_dom_sf	ProteinID:EES20399.1
InterPro:GH16	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576
GO:GO:0005618	GO:GO:0005623	GO:GO:0005975	GO:GO:0006073	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0016762	GO:GO:0016787	GO:GO:0030312	GO:GO:0048046
InterPro:IPR000757	EnsemblPlants:OQU75596	ProteinID:OQU75596	ProteinID:OQU75596.1	PFAM:PF00722	PFAM:PF06955
PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF49	EnsemblPlantsGene:SORBI_3K044406	SUPFAM:SSF49899	UniParc:UPI0001AFF6DC
InterPro:XET_C	RefSeq:XP_002488907.1	:	:	:	:

Description

hypothetical protein

Coordinates

chrsuper_2035:-:2574..3519

Molecular Weight (calculated)

18823.1 Da

IEP (calculated)

6.977

GRAVY (calculated)

-0.396

Length

162 amino acids

Sequence
(BLAST)

001: MQFRPWFDPT ADYHNYTIFW NQCMIVWFID DIPIRVFRNY SAQGVPFPTR RQMYAFSSIW AAEDWATQGG RVKTDWTKAP FVAEYRDINL RVCDCASYGA
101: AGCPDSCASS SNWYAAPDLC QLSEKQLKQM RAVQLGYTIY DYCADGKRYN GTVPLECSMR QY

Best Arabidopsis Sequence Match ( AT4G28850.1 )
(BLAST)

001: MAGLQAKTLM FVLAAALATL GRTFVEADFS KNFIVTWGKD HMFMNGTNLR LVLDKSAGSA IKSKVAHLFG SVEMLIKLVP GNSAGTVAAY YLSSTGSTHD
101: EIDFEFLGNA TGQPYTIHTN LYAQGKGNRE QQFRPWFNPT NGFHNYTIHW NPSEVVWFVD GTPIRVFRNY ESEGIAYPNK QGMKVFASLW NAEDWATQGG
201: RVKTNWTLAP FVAEGRRYKA RACLWKGSVS IKQCVDPTIR SNWWTSPSFS QLTASQLTKM QKIRDGFMIY DYCKDTNRFK GVMPPECSKK QF

Arabidopsis Description

XTH26Probable xyloglucan endotransglucosylase/hydrolase protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVV2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.