CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053320_P001	Maize	vacuole	90.69	90.38
EES04926	Sorghum	extracellular, vacuole	65.86	64.75
EER89799	Sorghum	vacuole	62.07	61.22
OQU75596	Sorghum	cytosol, extracellular, plastid	33.1	59.26
GSMUA_Achr8P19740_001	Banana	extracellular	49.31	53.16
GSMUA_Achr7P10940_001	Banana	extracellular	48.62	50.72
GSMUA_Achr3P03390_001	Banana	extracellular	50.69	50.0
VIT_11s0016g03480.t01	Wine grape	extracellular	47.59	47.42
KRH39331	Soybean	nucleus	47.24	47.4
Solyc12g007260.1.1	Tomato	extracellular	47.59	47.26
KRH41530	Soybean	nucleus	45.52	46.64
Solyc12g007250.1.1	Tomato	extracellular	46.55	46.39
KRH76320	Soybean	nucleus	46.21	46.37
EER90302	Sorghum	extracellular	45.17	45.49
EER90303	Sorghum	extracellular, golgi, vacuole	46.9	45.18
Solyc12g007270.1.1	Tomato	extracellular	45.52	45.05
CDY35228	Canola	extracellular	45.17	44.86
CDY06861	Canola	extracellular	44.83	44.52
AT4G28850.1	Thale cress	extracellular	44.83	44.52
Bra011066.1-P	Field mustard	extracellular	44.48	44.18
EER88885	Sorghum	extracellular	44.48	44.18
EES12802	Sorghum	endoplasmic reticulum, extracellular	42.41	43.31
EES11382	Sorghum	extracellular, vacuole	42.07	40.94
EES13578	Sorghum	extracellular	40.0	40.42
EER88886	Sorghum	golgi	43.45	40.0
EES12801	Sorghum	extracellular	40.0	38.28
OQU83588	Sorghum	extracellular	40.0	38.28
EES13579	Sorghum	vacuole	38.28	38.14
EES13577	Sorghum	extracellular	36.9	37.41
KXG24787	Sorghum	vacuole	37.59	37.2
EER91282	Sorghum	extracellular, vacuole	40.0	36.02
KXG36371	Sorghum	extracellular	39.31	35.74
EES11493	Sorghum	extracellular, vacuole	40.0	35.69

Protein Annotations

Gene3D:2.60.120.200	MapMan:50.2.4	EntrezGene:8060392	UniProt:C5Y038	InterPro:ConA-like_dom_sf	EnsemblPlants:EES04929
ProteinID:EES04929	ProteinID:EES04929.1	InterPro:GH16	InterPro:GH16_AS	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975
GO:GO:0006073	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010411	GO:GO:0016043
GO:GO:0016740	GO:GO:0016762	GO:GO:0016787	GO:GO:0016798	GO:GO:0030312	GO:GO:0042546
GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757	PFAM:PF00722	PFAM:PF06955	PIRSF:PIRSF005604
ScanProsite:PS01034	PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF95	EnsemblPlantsGene:SORBI_3004G127200	SUPFAM:SSF49899
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0001A8539B	InterPro:XET_C	RefSeq:XP_002451953.1	InterPro:XTH
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:15594537..15596258

Molecular Weight (calculated)

32097.6 Da

IEP (calculated)

6.486

GRAVY (calculated)

-0.318

Length

290 amino acids

Sequence
(BLAST)

001: MVRLRALLLV AVAAAVAGLA AANFRDDCDI PWEPQNAKFT SDGNGLSMSL VSNSSGCMLR TKKQYIYGTV STLIQLVPGN SAGTVTTYYA SSVGDNHDEI
101: DFEFLGNVSG QPYTFHTNIY TNGVGNKEIQ FKPWFDPTTG YHNYTISWSP CMIVWYVDSI PIRVFRNYQE SYGVAYPTSR PMYAYSSIWA AEDWATQGGR
201: VKTDWSKAPF VANYQNIHLD VCECGGGGGG CSINCPAAAA KPNNGACQLS PDQRELMQSR QRNYTIYDYC VDSKRWTNGI KPTECSLPQY

Best Arabidopsis Sequence Match ( AT4G25810.1 )
(BLAST)

001: MAMISYSTIV VALLASFMIC SVSANFQRDV EITWGDGRGQ ITNNGDLLTL SLDKASGSGF QSKNEYLFGK IDMQIKLVAG NSAGTVTAYY LKSPGSTWDE
101: IDFEFLGNLS GDPYTLHTNV FTQGKGDREQ QFKLWFDPTS DFHTYSILWN PQRIIFSVDG TPIREFKNME SQGTLFPKNQ PMRMYSSLWN AEEWATRGGL
201: VKTDWSKAPF TASYRGFNEE ACVVINGQSS CPNVSGQGST GSWLSQELDS TGQEQMRWVQ NNYMIYNYCT DAKRFPQGLP RECLAA

Arabidopsis Description

XTH23Probable xyloglucan endotransglucosylase/hydrolase protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q38910]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.