CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002410_P001	Maize	extracellular	88.03	90.25
Zm00001d026250_P001	Maize	extracellular, vacuole	86.27	89.74
Os04t0604300-01	Rice	extracellular	78.17	79.29
TraesCS2B01G454800.1	Wheat	extracellular	72.18	73.21
TraesCS2D01G431800.1	Wheat	endoplasmic reticulum, extracellular	71.83	72.86
TraesCS2A01G433800.1	Wheat	endoplasmic reticulum, extracellular	70.77	71.79
EER90302	Sorghum	extracellular	53.87	53.12
EER88885	Sorghum	extracellular	54.23	52.74
KXG24787	Sorghum	vacuole	52.82	51.19
EER90303	Sorghum	extracellular, golgi, vacuole	53.87	50.83
EES12801	Sorghum	extracellular	53.87	50.49
EES13577	Sorghum	extracellular	48.94	48.6
EES13579	Sorghum	vacuole	48.94	47.77
EES11382	Sorghum	extracellular, vacuole	49.3	46.98
EES13578	Sorghum	extracellular	47.18	46.69
EER88886	Sorghum	golgi	49.65	44.76
EES04926	Sorghum	extracellular, vacuole	44.72	43.05
EES04929	Sorghum	extracellular, vacuole	43.31	42.41
OQU75596	Sorghum	cytosol, extracellular, plastid	23.94	41.98
EER89799	Sorghum	vacuole	42.96	41.5
OQU83588	Sorghum	extracellular	41.9	39.27
KXG36371	Sorghum	extracellular	42.96	38.24
EER91282	Sorghum	extracellular, vacuole	41.55	36.65
EES11493	Sorghum	extracellular, vacuole	41.55	36.31

Protein Annotations

Gene3D:2.60.120.200	MapMan:50.2.4	EntrezGene:8072291	UniProt:C5YFH5	InterPro:ConA-like_dom_sf	EnsemblPlants:EES12802
ProteinID:EES12802	ProteinID:EES12802.1	InterPro:GH16	InterPro:GH16_AS	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975
GO:GO:0006073	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010411	GO:GO:0016043
GO:GO:0016740	GO:GO:0016762	GO:GO:0016787	GO:GO:0016798	GO:GO:0030312	GO:GO:0042546
GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757	PFAM:PF00722	PFAM:PF06955	PIRSF:PIRSF005604
ScanProsite:PS01034	PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF94	EnsemblPlantsGene:SORBI_3006G205600	SUPFAM:SSF49899
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0001A874E4	InterPro:XET_C	RefSeq:XP_002448474.1	InterPro:XTH
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:55538298..55540028

Molecular Weight (calculated)

31032.9 Da

IEP (calculated)

4.772

GRAVY (calculated)

-0.319

Length

284 amino acids

Sequence
(BLAST)

001: MASAFSSSGA CVLLALLLVL FATGAPTAAA AGRVDDGLEV TWGDGRGSVS PDGQVLSLSL DHTSGSGFRS KDTYLFARAD AQIKLVPNNS AGTVTTFYFI
101: SEGPWDVHDE VDLEFLGNVS GQPYTLHTNV YANGNGGREQ QFHLWFDPTA DFHTYSIEWT QQHILVLVDG TPIREFKNHA DRGVPYPSSQ RMRLYGSLWD
201: AEDWATQGGR VKTDWSQAPF VAQYRSFTAT ATPPAAATTA GYGQQMDAAA QQSMKWARDN YMVYDYCADT KRFPQGVPPE CSMP

Best Arabidopsis Sequence Match ( AT4G30270.1 )
(BLAST)

001: MSPFKIFFFT TLLVAAFSVS AADFNTDVNV AWGNGRGKIL NNGQLLTLSL DKSSGSGFQS KTEYLFGKID MQIKLVPGNS AGTVTTFYLK SEGSTWDEID
101: FEFLGNMSGD PYTLHTNVYT QGKGDKEQQF HLWFDPTANF HTYSILWNPQ RIILTVDDTP IREFKNYESL GVLFPKNKPM RMYASLWNAD DWATRGGLVK
201: TDWSKAPFMA SYRNIKIDSK PNSNWYTQEM DSTSQARLKW VQKNYMIYNY CTDHRRFPQG APKECTTSS

Arabidopsis Description

XTH24Xyloglucan endotransglucosylase/hydrolase protein 24 [Source:UniProtKB/Swiss-Prot;Acc:P24806]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.