Factsheet for Solyc03g031800.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 26583031
extracellular: 29876421

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061841	Potato	extracellular	96.95	96.95
Solyc10g005350.2.1	Tomato	extracellular	83.39	85.42
KRG91233	Soybean	extracellular	79.32	77.74
KRH35587	Soybean	extracellular	78.31	76.49
VIT_10s0116g00520.t01	Wine grape	extracellular, vacuole	75.25	74.0
Bra019846.1-P	Field mustard	extracellular	72.88	71.91
CDX97967	Canola	extracellular	72.88	71.91
CDY49788	Canola	extracellular	72.54	71.57
Solyc02g080160.2.1	Tomato	extracellular	72.2	71.48
AT1G11545.1	Thale cress	extracellular	72.2	69.84
GSMUA_Achr1P08500_001	Banana	extracellular	62.03	67.53
TraesCS2D01G224300.1	Wheat	extracellular	63.05	61.18
TraesCS2B01G244500.1	Wheat	extracellular	63.39	61.11
KXG36371	Sorghum	extracellular	61.69	57.05
Zm00001d021667_P001	Maize	plasma membrane	62.03	55.45
HORVU2Hr1G045330.4	Barley	extracellular, vacuole	62.71	49.87
Solyc11g065600.1.1	Tomato	nucleus	47.46	47.78
Solyc01g099630.2.1	Tomato	extracellular	46.78	46.62
Solyc11g040140.1.1	Tomato	extracellular	46.78	46.0
Solyc07g009380.2.1	Tomato	extracellular, nucleus	42.71	45.82
Solyc02g091920.2.1	Tomato	nucleus	45.76	45.76
Solyc12g098610.1.1	Tomato	nucleus	40.0	45.21
Solyc03g093120.2.1	Tomato	extracellular	43.73	45.1
Solyc03g093130.2.1	Tomato	extracellular	43.39	44.6
Solyc03g098430.2.1	Tomato	extracellular	42.71	44.52
Solyc05g046290.2.1	Tomato	extracellular	43.39	44.44
Solyc03g093080.2.1	Tomato	extracellular	43.05	44.41
Solyc07g052980.2.1	Tomato	extracellular	44.41	44.26
Solyc03g093110.2.1	Tomato	extracellular	43.05	44.25
Solyc07g006860.2.1	Tomato	extracellular	42.71	44.21
Solyc09g092520.2.1	Tomato	nucleus	41.36	44.2
Solyc07g006870.2.1	Tomato	extracellular, vacuole	41.02	42.91
Solyc01g106650.2.1	Tomato	extracellular, vacuole	39.66	39.93
Solyc12g007250.1.1	Tomato	extracellular	39.32	39.86
Solyc07g056000.2.1	Tomato	extracellular, nucleus	38.64	39.72
Solyc07g055990.2.1	Tomato	nucleus	38.98	39.66
Solyc12g007260.1.1	Tomato	extracellular	38.98	39.38
Solyc12g007270.1.1	Tomato	extracellular	38.98	39.25
Solyc12g017240.1.1	Tomato	extracellular	38.31	39.1
Solyc12g011030.1.1	Tomato	nucleus	34.92	37.18
Solyc07g006850.1.1	Tomato	golgi	41.69	35.96

Protein Annotations

Gene3D:2.60.120.200	MapMan:50.2.4	InterPro:Beta_glucanase	InterPro:ConA-like_dom_sf	InterPro:GH16	InterPro:GH16_AS
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618
GO:GO:0005623	GO:GO:0005975	GO:GO:0006073	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010411	GO:GO:0016043	GO:GO:0016740	GO:GO:0016762	GO:GO:0016787	GO:GO:0016798
GO:GO:0030312	GO:GO:0042546	GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757	UniProt:K4BFF2
PFAM:PF00722	PFAM:PF06955	PIRSF:PIRSF005604	PRINTS:PR00737	ScanProsite:PS01034	PFscan:PS51762
PANTHER:PTHR31062	PANTHER:PTHR31062:SF1	SUPFAM:SSF49899	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc03g031800.2	EnsemblPlants:Solyc03g031800.2.1
TMHMM:TMhelix	UniParc:UPI0002767625	InterPro:XET_C	InterPro:XTH	:	:

Description

Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:K4BFF2]

Coordinates

chr3:+:4282559..4284737

Molecular Weight (calculated)

34514.1 Da

IEP (calculated)

4.718

GRAVY (calculated)

-0.559

Length

295 amino acids

Sequence
(BLAST)

001: MASPIAYFLV LSAIIVVLFS STQAEVQGSF DDNFSKSCPE THFKTSEDGQ IWYLSLDKKA GCGFMTKQKY RFGWFSMKLK LVGGDSAGVV TAYYMCTEDG
101: AGPTRDELDF EFLGNRTGEP YLIQTNVYKN GTGNREMRHV LWFDPTEDFH TYSVLWNTHQ IVFFVDKVPI RVYKNANYTN NFFPNEKPMY LFSSIWNADD
201: WATRGGLEKT NWKNQPFVSS YKDFSVDGCQ WEDPYPSCVS TTTQNWWDQY DSWHLSSDQK LDYAWVQRNL VIYDYCQDTE RFPKKPEECW LNPWE

Best Arabidopsis Sequence Match ( AT1G11545.1 )
(BLAST)

001: METERRIITS CSAMTALFLF MTALMASSSI AATPTQSFED NFNIMWSENH FTTSDDGEIW NLSLDNDTGC GFQTKHMYRF GWFSMKLKLV GGDSAGVVTA
101: YYMCSENGAG PERDEIDFEF LGNRTGQPYI IQTNVYKNGT GNREMRHSLW FDPTKDYHTY SILWNNHQLV FFVDRVPIRV YKNSDKVPNN DFFPNQKPMY
201: LFSSIWNADD WATRGGLEKT DWKKAPFVSS YKDFAVEGCR WKDPFPACVS TTTENWWDQY DAWHLSKTQK MDYAWVQRNL VVYDYCKDSE RFPTLPWECS
301: ISPWA

Arabidopsis Description

XTH8Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178W0W2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.