Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 5
- golgi 5
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
22892874
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400063689 | Potato | vacuole | 97.97 | 97.97 |
Solyc11g065600.1.1 | Tomato | nucleus | 81.08 | 81.91 |
Solyc11g040140.1.1 | Tomato | extracellular | 64.86 | 64.0 |
Solyc12g098610.1.1 | Tomato | nucleus | 46.96 | 53.26 |
Solyc09g092520.2.1 | Tomato | nucleus | 46.62 | 50.0 |
Solyc07g006870.2.1 | Tomato | extracellular, vacuole | 46.62 | 48.94 |
Solyc03g093080.2.1 | Tomato | extracellular | 46.28 | 47.9 |
Solyc02g091920.2.1 | Tomato | nucleus | 47.3 | 47.46 |
Solyc03g093120.2.1 | Tomato | extracellular | 45.61 | 47.2 |
Solyc03g093130.2.1 | Tomato | extracellular | 45.61 | 47.04 |
Solyc03g031800.2.1 | Tomato | extracellular | 46.62 | 46.78 |
Solyc07g006860.2.1 | Tomato | extracellular | 44.93 | 46.67 |
Solyc03g093110.2.1 | Tomato | extracellular | 44.93 | 46.34 |
Solyc12g017240.1.1 | Tomato | extracellular | 44.93 | 46.02 |
Solyc05g046290.2.1 | Tomato | extracellular | 44.59 | 45.83 |
Solyc07g009380.2.1 | Tomato | extracellular, nucleus | 42.57 | 45.82 |
Solyc03g098430.2.1 | Tomato | extracellular | 43.58 | 45.58 |
Solyc07g056000.2.1 | Tomato | extracellular, nucleus | 43.92 | 45.3 |
Solyc07g052980.2.1 | Tomato | extracellular | 45.27 | 45.27 |
Solyc02g080160.2.1 | Tomato | extracellular | 44.59 | 44.3 |
Solyc10g005350.2.1 | Tomato | extracellular | 42.91 | 44.1 |
Solyc07g055990.2.1 | Tomato | nucleus | 42.91 | 43.79 |
Solyc12g007260.1.1 | Tomato | extracellular | 41.89 | 42.47 |
Solyc12g007270.1.1 | Tomato | extracellular | 41.89 | 42.32 |
Solyc12g007250.1.1 | Tomato | extracellular | 41.55 | 42.27 |
Solyc01g106650.2.1 | Tomato | extracellular, vacuole | 40.54 | 40.96 |
Solyc12g011030.1.1 | Tomato | nucleus | 37.5 | 40.07 |
Solyc07g006850.1.1 | Tomato | golgi | 44.26 | 38.3 |
Protein Annotations
Gene3D:2.60.120.200 | MapMan:50.2.4 | InterPro:Beta_glucanase | InterPro:ConA-like_dom_sf | EMBL:D16456 | InterPro:GH16 |
InterPro:GH16_AS | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005575 | GO:GO:0005576 |
GO:GO:0005618 | GO:GO:0005623 | GO:GO:0005975 | GO:GO:0006073 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009987 | GO:GO:0010411 | GO:GO:0016043 | GO:GO:0016740 | GO:GO:0016762 | GO:GO:0016787 |
GO:GO:0016798 | GO:GO:0030312 | GO:GO:0042546 | GO:GO:0048046 | GO:GO:0071555 | InterPro:IPR000757 |
PFAM:PF00722 | PFAM:PF06955 | PIRSF:PIRSF005604 | PRINTS:PR00737 | ScanProsite:PS01034 | PFscan:PS51762 |
PANTHER:PTHR31062 | PANTHER:PTHR31062:SF97 | UniProt:Q40144 | SUPFAM:SSF49899 | SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc01g099630.2 |
EnsemblPlants:Solyc01g099630.2.1 | TMHMM:TMhelix | UniParc:UPI00000A2743 | InterPro:XET_C | InterPro:XTH | : |
Description
XTH1Probable xyloglucan endotransglucosylase/hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q40144]
Coordinates
chr1:-:89810092..89812819
Molecular Weight (calculated)
34012.3 Da
IEP (calculated)
8.825
GRAVY (calculated)
-0.367
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIIKGVLFS IVLINLSLVV FCGYPRRPVD VPFWKNYEPS WASHHIKFLN GGTTTDLILD RSSGAGFQSK KSYLFGHFSM KMRLVGGDSA GVVTAFYLSS
101: NNAEHDEIDF EFLGNRTGQP YILQTNVFTG GKGNREQRIY LWFDPTKGYH SYSVLWNTYL IVIFVDDVPI RAFKNSKDLG VKFPFNQPMK IYSSLWDADD
201: WATRGGLEKT NWANAPFTAS YTSFHVDGCE AATPQEVQVC NTKGMKWWDQ KAFQDLDALQ YRRLRWVRQK YTVYNYCTDK ARYPVPPPEC TKDRDI
101: NNAEHDEIDF EFLGNRTGQP YILQTNVFTG GKGNREQRIY LWFDPTKGYH SYSVLWNTYL IVIFVDDVPI RAFKNSKDLG VKFPFNQPMK IYSSLWDADD
201: WATRGGLEKT NWANAPFTAS YTSFHVDGCE AATPQEVQVC NTKGMKWWDQ KAFQDLDALQ YRRLRWVRQK YTVYNYCTDK ARYPVPPPEC TKDRDI
001: MGRLSSTLCL TFLILATVAF GVPPKKSINV PFGRNYFPTW AFDHIKYLNG GSEVHLVLDK YTGTGFQSKG SYLFGHFSMH IKMVAGDSAG TVTAFYLSSQ
101: NSEHDEIDFE FLGNRTGQPY ILQTNVFTGG AGNREQRINL WFDPSKDYHS YSVLWNMYQI VFFVDDVPIR VFKNSKDVGV KFPFNQPMKI YSSLWNADDW
201: ATRGGLEKTN WEKAPFVASY RGFHVDGCEA SVNAKFCETQ GKRWWDQKEF QDLDANQYKR LKWVRKRYTI YNYCTDRVRF PVPPPECRRD RDI
101: NSEHDEIDFE FLGNRTGQPY ILQTNVFTGG AGNREQRINL WFDPSKDYHS YSVLWNMYQI VFFVDDVPIR VFKNSKDVGV KFPFNQPMKI YSSLWNADDW
201: ATRGGLEKTN WEKAPFVASY RGFHVDGCEA SVNAKFCETQ GKRWWDQKEF QDLDANQYKR LKWVRKRYTI YNYCTDRVRF PVPPPECRRD RDI
Arabidopsis Description
XTH5Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:Q67Z90]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.