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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 7
  • plasma membrane 5
  • golgi 5
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:vacuole
Plant-mPloc:cytosol, extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:extracellular
extracellular: 22892874
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22892874 doi
EH Konozy, H Rogniaux, M Causse, M Faurobert
Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400063689 Potato vacuole 97.97 97.97
Solyc11g065600.1.1 Tomato nucleus 81.08 81.91
Solyc11g040140.1.1 Tomato extracellular 64.86 64.0
Solyc12g098610.1.1 Tomato nucleus 46.96 53.26
Solyc09g092520.2.1 Tomato nucleus 46.62 50.0
Solyc07g006870.2.1 Tomato extracellular, vacuole 46.62 48.94
Solyc03g093080.2.1 Tomato extracellular 46.28 47.9
Solyc02g091920.2.1 Tomato nucleus 47.3 47.46
Solyc03g093120.2.1 Tomato extracellular 45.61 47.2
Solyc03g093130.2.1 Tomato extracellular 45.61 47.04
Solyc03g031800.2.1 Tomato extracellular 46.62 46.78
Solyc07g006860.2.1 Tomato extracellular 44.93 46.67
Solyc03g093110.2.1 Tomato extracellular 44.93 46.34
Solyc12g017240.1.1 Tomato extracellular 44.93 46.02
Solyc05g046290.2.1 Tomato extracellular 44.59 45.83
Solyc07g009380.2.1 Tomato extracellular, nucleus 42.57 45.82
Solyc03g098430.2.1 Tomato extracellular 43.58 45.58
Solyc07g056000.2.1 Tomato extracellular, nucleus 43.92 45.3
Solyc07g052980.2.1 Tomato extracellular 45.27 45.27
Solyc02g080160.2.1 Tomato extracellular 44.59 44.3
Solyc10g005350.2.1 Tomato extracellular 42.91 44.1
Solyc07g055990.2.1 Tomato nucleus 42.91 43.79
Solyc12g007260.1.1 Tomato extracellular 41.89 42.47
Solyc12g007270.1.1 Tomato extracellular 41.89 42.32
Solyc12g007250.1.1 Tomato extracellular 41.55 42.27
Solyc01g106650.2.1 Tomato extracellular, vacuole 40.54 40.96
Solyc12g011030.1.1 Tomato nucleus 37.5 40.07
Solyc07g006850.1.1 Tomato golgi 44.26 38.3
Protein Annotations
Gene3D:2.60.120.200MapMan:50.2.4InterPro:Beta_glucanaseInterPro:ConA-like_dom_sfEMBL:D16456InterPro:GH16
InterPro:GH16_ASGO:GO:0003674GO:GO:0003824GO:GO:0004553GO:GO:0005575GO:GO:0005576
GO:GO:0005618GO:GO:0005623GO:GO:0005975GO:GO:0006073GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0010411GO:GO:0016043GO:GO:0016740GO:GO:0016762GO:GO:0016787
GO:GO:0016798GO:GO:0030312GO:GO:0042546GO:GO:0048046GO:GO:0071555InterPro:IPR000757
PFAM:PF00722PFAM:PF06955PIRSF:PIRSF005604PRINTS:PR00737ScanProsite:PS01034PFscan:PS51762
PANTHER:PTHR31062PANTHER:PTHR31062:SF97UniProt:Q40144SUPFAM:SSF49899SignalP:SignalP-noTMEnsemblPlantsGene:Solyc01g099630.2
EnsemblPlants:Solyc01g099630.2.1TMHMM:TMhelixUniParc:UPI00000A2743InterPro:XET_CInterPro:XTH:
Description
XTH1Probable xyloglucan endotransglucosylase/hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q40144]
Coordinates
chr1:-:89810092..89812819
Molecular Weight (calculated)
34012.3 Da
IEP (calculated)
8.825
GRAVY (calculated)
-0.367
Length
296 amino acids
Sequence
(BLAST)
001: MGIIKGVLFS IVLINLSLVV FCGYPRRPVD VPFWKNYEPS WASHHIKFLN GGTTTDLILD RSSGAGFQSK KSYLFGHFSM KMRLVGGDSA GVVTAFYLSS
101: NNAEHDEIDF EFLGNRTGQP YILQTNVFTG GKGNREQRIY LWFDPTKGYH SYSVLWNTYL IVIFVDDVPI RAFKNSKDLG VKFPFNQPMK IYSSLWDADD
201: WATRGGLEKT NWANAPFTAS YTSFHVDGCE AATPQEVQVC NTKGMKWWDQ KAFQDLDALQ YRRLRWVRQK YTVYNYCTDK ARYPVPPPEC TKDRDI
Best Arabidopsis Sequence Match ( AT5G13870.3 )
(BLAST)
001: MGRLSSTLCL TFLILATVAF GVPPKKSINV PFGRNYFPTW AFDHIKYLNG GSEVHLVLDK YTGTGFQSKG SYLFGHFSMH IKMVAGDSAG TVTAFYLSSQ
101: NSEHDEIDFE FLGNRTGQPY ILQTNVFTGG AGNREQRINL WFDPSKDYHS YSVLWNMYQI VFFVDDVPIR VFKNSKDVGV KFPFNQPMKI YSSLWNADDW
201: ATRGGLEKTN WEKAPFVASY RGFHVDGCEA SVNAKFCETQ GKRWWDQKEF QDLDANQYKR LKWVRKRYTI YNYCTDRVRF PVPPPECRRD RDI
Arabidopsis Description
XTH5Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:Q67Z90]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.