Factsheet for PGSC0003DMT400063689

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	cytosol, extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g099630.2.1	Tomato	extracellular	97.97	97.97
PGSC0003DMT400028324	Potato	vacuole	82.09	82.37
PGSC0003DMT400005591	Potato	extracellular	65.2	65.2
PGSC0003DMT400011902	Potato	extracellular	47.97	50.9
PGSC0003DMT400056316	Potato	extracellular	46.62	50.0
PGSC0003DMT400048242	Potato	extracellular	46.28	49.1
PGSC0003DMT400038413	Potato	extracellular	46.96	48.6
PGSC0003DMT400005949	Potato	cytosol	31.76	48.45
PGSC0003DMT400055138	Potato	extracellular	47.64	47.8
PGSC0003DMT400048241	Potato	extracellular	45.95	47.72
PGSC0003DMT400036329	Potato	extracellular	45.27	47.52
PGSC0003DMT400079856	Potato	extracellular	45.61	47.04
PGSC0003DMT400026398	Potato	extracellular	44.59	46.64
PGSC0003DMT400020314	Potato	cytosol, nucleus, peroxisome	42.91	46.35
PGSC0003DMT400044562	Potato	extracellular	44.59	45.99
PGSC0003DMT400067358	Potato	extracellular	45.95	45.95
PGSC0003DMT400061841	Potato	extracellular	45.61	45.76
PGSC0003DMT400020122	Potato	extracellular	44.26	45.17
PGSC0003DMT400044559	Potato	extracellular	43.58	44.48
PGSC0003DMT400013128	Potato	extracellular	23.99	44.38
PGSC0003DMT400005342	Potato	extracellular	44.26	43.96
PGSC0003DMT400048240	Potato	golgi	43.92	38.01

Protein Annotations

EntrezGene:102603929	Gene3D:2.60.120.200	MapMan:50.2.4	InterPro:Beta_glucanase	InterPro:ConA-like_dom_sf	InterPro:GH16
InterPro:GH16_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576
GO:GO:0005618	GO:GO:0005623	GO:GO:0005975	GO:GO:0006073	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010411	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016740
GO:GO:0016762	GO:GO:0016787	GO:GO:0016798	GO:GO:0030312	GO:GO:0042546	GO:GO:0048046
GO:GO:0071555	InterPro:IPR000757	UniProt:M1CB14	PFAM:PF00722	PFAM:PF06955	EnsemblPlantsGene:PGSC0003DMG400024755
PGSC:PGSC0003DMG400024755	EnsemblPlants:PGSC0003DMT400063689	PIRSF:PIRSF005604	PRINTS:PR00737	ScanProsite:PS01034	PFscan:PS51762
PANTHER:PTHR31062	PANTHER:PTHR31062:SF97	SUPFAM:SSF49899	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000295E55F
InterPro:XET_C	RefSeq:XP_006344664.1	InterPro:XTH	:	:	:

Description

Xyloglucan endotransglucosylase/hydrolase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400024755]

Coordinates

chr1:-:77350563..77353332

Molecular Weight (calculated)

33929.2 Da

IEP (calculated)

8.637

GRAVY (calculated)

-0.387

Length

296 amino acids

Sequence
(BLAST)

001: MGTIKGVLFS IVLINLSLVG FCGYPRRPVD VPFWKNYEPS WASHHIKFLN GGATTDLILD RSSGAGFQSK KSYLFGHFSM KMRLVGGDSA GVVTAFYLSS
101: NNAEHDEIDF EFLGNRTGQP YILQTNVFTG GKGNREQRIF LWFDPTKGYH SYSVLWNTYL IVIFVDDVPI RAFKNSKDLG VKFPFNQPMK IYSSLWDADD
201: WATRGGLEKT DWSNAPFTAS YTSFHVDGCE AATPQEVQVC NTKGMKWWDQ KAFQDLDALQ YRRLRWVRQK YTVYNYCTDK ARYPVPPPEC TKDRDI

Best Arabidopsis Sequence Match ( AT5G13870.3 )
(BLAST)

001: MGRLSSTLCL TFLILATVAF GVPPKKSINV PFGRNYFPTW AFDHIKYLNG GSEVHLVLDK YTGTGFQSKG SYLFGHFSMH IKMVAGDSAG TVTAFYLSSQ
101: NSEHDEIDFE FLGNRTGQPY ILQTNVFTGG AGNREQRINL WFDPSKDYHS YSVLWNMYQI VFFVDDVPIR VFKNSKDVGV KFPFNQPMKI YSSLWNADDW
201: ATRGGLEKTN WEKAPFVASY RGFHVDGCEA SVNAKFCETQ GKRWWDQKEF QDLDANQYKR LKWVRKRYTI YNYCTDRVRF PVPPPECRRD RDI

Arabidopsis Description

XTH5Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:Q67Z90]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.