Factsheet for PGSC0003DMT400067358

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g052980.2.1	Tomato	extracellular	97.64	97.64
KRH22496	Soybean	extracellular	76.01	77.59
VIT_12s0134g00160.t01	Wine grape	extracellular	75.0	75.0
KRH26853	Soybean	vacuole	74.32	74.32
KRH56088	Soybean	vacuole	72.97	72.73
KRH25426	Soybean	extracellular	72.64	72.15
AT4G03210.1	Thale cress	extracellular	66.89	68.28
CDY21985	Canola	extracellular	66.55	67.93
CDY22110	Canola	extracellular	66.22	67.59
CDY53771	Canola	extracellular	65.88	67.24
GSMUA_Achr9P29980_001	Banana	extracellular, vacuole	60.47	67.04
Bra000840.1-P	Field mustard	extracellular	65.54	66.9
CDX90896	Canola	extracellular	65.2	66.55
GSMUA_Achr6P19100_001	Banana	extracellular, vacuole	58.45	64.07
Bra034193.1-P	Field mustard	cytosol	66.22	56.98
EER91282	Sorghum	extracellular, vacuole	57.09	52.48
EES11493	Sorghum	extracellular, vacuole	57.09	52.0
PGSC0003DMT400026398	Potato	extracellular	48.31	50.53
PGSC0003DMT400055138	Potato	extracellular	50.34	50.51
Zm00001d002193_P003	Maize	extracellular, vacuole	56.76	49.85
PGSC0003DMT400005949	Potato	cytosol	32.43	49.48
PGSC0003DMT400005591	Potato	extracellular	49.32	49.32
PGSC0003DMT400038413	Potato	extracellular	46.62	48.25
PGSC0003DMT400020314	Potato	cytosol, nucleus, peroxisome	44.59	48.18
PGSC0003DMT400056316	Potato	extracellular	44.59	47.83
PGSC0003DMT400044559	Potato	extracellular	46.62	47.59
PGSC0003DMT400028324	Potato	vacuole	46.62	46.78
PGSC0003DMT400011902	Potato	extracellular	43.92	46.59
PGSC0003DMT400048242	Potato	extracellular	43.58	46.24
PGSC0003DMT400079856	Potato	extracellular	44.59	45.99
PGSC0003DMT400063689	Potato	vacuole	45.95	45.95
PGSC0003DMT400020122	Potato	extracellular	44.93	45.86
PGSC0003DMT400036329	Potato	extracellular	43.58	45.74
PGSC0003DMT400044562	Potato	extracellular	44.26	45.64
PGSC0003DMT400048241	Potato	extracellular	43.92	45.61
PGSC0003DMT400061841	Potato	extracellular	44.59	44.75
PGSC0003DMT400005342	Potato	extracellular	44.59	44.3
PGSC0003DMT400013128	Potato	extracellular	22.97	42.5
PGSC0003DMT400048240	Potato	golgi	45.61	39.47

Protein Annotations

EntrezGene:102603337	Gene3D:2.60.120.200	MapMan:50.2.4	InterPro:Beta_glucanase	InterPro:ConA-like_dom_sf	InterPro:GH16
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618
GO:GO:0005623	GO:GO:0005975	GO:GO:0006073	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010411	GO:GO:0016043	GO:GO:0016740	GO:GO:0016762	GO:GO:0016787	GO:GO:0016798
GO:GO:0030312	GO:GO:0042546	GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757	UniProt:M1CH54
PFAM:PF00722	PFAM:PF06955	EnsemblPlantsGene:PGSC0003DMG400026189	PGSC:PGSC0003DMG400026189	EnsemblPlants:PGSC0003DMT400067358	PIRSF:PIRSF005604
PRINTS:PR00737	PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF11	SUPFAM:SSF49899	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI000294FF8B	InterPro:XET_C	RefSeq:XP_006360548.1	InterPro:XTH	:

Description

Xyloglucan endotransglycosylase/hydrolase 16 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026189]

Coordinates

chr7:+:47622734..47624411

Molecular Weight (calculated)

33875.8 Da

IEP (calculated)

6.504

GRAVY (calculated)

-0.409

Length

296 amino acids

Sequence
(BLAST)

001: MVCFNWVSLS FVMLFMVGLV SSAKFEELYQ PSWAFDHLTT EGEILRMKLD HLSGTGFQSK SKYMFGKVTV QIKLVEGDSA GTVTAFYMSS DGPTHNEFDF
101: EFLGNTTGEP YTVQTNVYVN GVGNREQRLK LWFDPSKDFH SYSIMWNQRQ VVFLVDETPV RVHSNLEHRG IPYPKDQPMG VYSSIWNADD WATQGGLVKT
201: DWSHAPFVAS YKGFEINGCA CPATVASAEN TRRCSSNGQK KYWWDEPVMS ELNVHQSHQL IWVRANHMVY DYCTDTARFP VAPVECQHHQ HKTNHN

Best Arabidopsis Sequence Match ( AT4G03210.1 )
(BLAST)

001: MVGMDLFKCV MMIMVLVVSC GEAVSGAKFD ELYRSSWAMD HCVNEGEVTK LKLDNYSGAG FESRSKYLFG KVSIQIKLVE GDSAGTVTAF YMSSDGPNHN
101: EFDFEFLGNT TGEPYIVQTN IYVNGVGNRE QRLNLWFDPT TEFHTYSILW SKRSVVFMVD ETPIRVQKNL EEKGIPFAKD QAMGVYSSIW NADDWATQGG
201: LVKTDWSHAP FVASYKEFQI DACEIPTTTD LSKCNGDQKF WWDEPTVSEL SLHQNHQLIW VRANHMIYDY CFDATRFPVT PLECQHHRHL

Arabidopsis Description

XTH9Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178V222]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.