Factsheet for VIT_12s0134g00160.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22496	Soybean	extracellular	77.7	79.31
KRH25426	Soybean	extracellular	78.72	78.19
KRH56088	Soybean	vacuole	77.7	77.44
Solyc07g052980.2.1	Tomato	extracellular	76.35	76.35
KRH26853	Soybean	vacuole	76.35	76.35
PGSC0003DMT400067358	Potato	extracellular	75.0	75.0
AT4G03210.1	Thale cress	extracellular	68.24	69.66
CDY21985	Canola	extracellular	68.24	69.66
CDY22110	Canola	extracellular	68.24	69.66
CDY53771	Canola	extracellular	67.57	68.97
Bra000840.1-P	Field mustard	extracellular	67.23	68.62
CDX90896	Canola	extracellular	67.23	68.62
GSMUA_Achr9P29980_001	Banana	extracellular, vacuole	61.15	67.79
GSMUA_Achr6P19100_001	Banana	extracellular, vacuole	60.14	65.93
VIT_17s0053g00610.t01	Wine grape	cytosol	45.95	62.96
Bra034193.1-P	Field mustard	cytosol	67.57	58.14
EER91282	Sorghum	extracellular, vacuole	56.08	51.55
EES11493	Sorghum	extracellular, vacuole	56.08	51.08
VIT_11s0052g01330.t01	Wine grape	extracellular, vacuole	44.26	50.0
Zm00001d002193_P003	Maize	extracellular, vacuole	56.42	49.55
VIT_05s0062g00480.t01	Wine grape	cytosol	43.92	49.06
VIT_05s0062g00610.t01	Wine grape	cytosol	43.92	49.06
VIT_11s0052g01250.t01	Wine grape	extracellular	47.3	48.44
VIT_11s0052g01230.t01	Wine grape	cytosol	44.59	47.48
VIT_05s0062g00250.t01	Wine grape	extracellular	44.59	47.31
VIT_10s0003g02440.t01	Wine grape	extracellular	43.58	47.25
VIT_01s0150g00460.t01	Wine grape	extracellular	48.65	46.91
VIT_05s0062g00240.t01	Wine grape	extracellular	43.92	46.26
VIT_11s0052g01220.t01	Wine grape	extracellular	44.26	45.96
VIT_11s0052g01320.t01	Wine grape	extracellular	45.61	45.61
VIT_11s0052g01280.t01	Wine grape	endoplasmic reticulum, extracellular	45.61	45.61
VIT_11s0052g01200.t01	Wine grape	extracellular	45.61	45.45
VIT_11s0052g01310.t01	Wine grape	extracellular	41.22	45.35
VIT_11s0052g01300.t01	Wine grape	extracellular	45.27	45.27
VIT_11s0052g01270.t01	Wine grape	extracellular	45.27	45.12
VIT_11s0052g01260.t01	Wine grape	endoplasmic reticulum, extracellular	44.93	44.93
VIT_11s0052g01340.t01	Wine grape	extracellular	41.22	44.85
VIT_10s0116g00520.t01	Wine grape	extracellular, vacuole	43.92	43.33
VIT_11s0016g03480.t01	Wine grape	extracellular	42.57	43.3
VIT_03s0088g00650.t01	Wine grape	extracellular, vacuole	42.91	43.05
VIT_11s0052g01180.t01	Wine grape	cytosol	45.61	42.06
VIT_11s0052g01190.t01	Wine grape	vacuole	46.28	37.13
VIT_11s0052g01210.t01	Wine grape	extracellular, plastid	44.93	8.4

Protein Annotations

EntrezGene:100248328	wikigene:100248328	Gene3D:2.60.120.200	MapMan:50.2.4	UniProt:A5BHG3	EMBL:AM459717
InterPro:Beta_glucanase	ProteinID:CAN74580	ProteinID:CAN74580.1	ProteinID:CBI17977	ProteinID:CBI17977.3	InterPro:ConA-like_dom_sf
EMBL:FN594966	InterPro:GH16	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975	GO:GO:0006073	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010411	GO:GO:0016043	GO:GO:0016740	GO:GO:0016762
GO:GO:0016787	GO:GO:0016798	GO:GO:0030312	GO:GO:0042546	GO:GO:0048046	GO:GO:0071555
InterPro:IPR000757	EntrezGene:LOC100248328	wikigene:LOC100248328	PFAM:PF00722	PFAM:PF06955	PIRSF:PIRSF005604
PRINTS:PR00737	PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF11	SUPFAM:SSF49899	SignalP:SignalP-noTM
TIGR:TC57673	TMHMM:TMhelix	UniParc:UPI000152115F	ArrayExpress:VIT_12s0134g00160	EnsemblPlantsGene:VIT_12s0134g00160	EnsemblPlants:VIT_12s0134g00160.t01
unigene:Vvi.5378	InterPro:XET_C	RefSeq:XP_002281574	RefSeq:XP_002281574.1	InterPro:XTH	SEG:seg

Description

Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:A5BHG3]

Coordinates

chr12:+:7708822..7710848

Molecular Weight (calculated)

33659.5 Da

IEP (calculated)

5.902

GRAVY (calculated)

-0.320

Length

296 amino acids

Sequence
(BLAST)

001: MAVPSVLPLL FGFLAFSVVV FVGSASSSKF TELFQPGWAF DHFLYEGELL KLKLDNYSGA GFSSKSKYMF GKVSIQIKLV EGDSAGTVTA FYMSSDGPNH
101: NEFDFEFLGN TTGEPYLVQT NIYVNGVGNR EQRLNLWFDP TKDFHSYTFM WNQRQVVFLV DETPVRVHTN MEKHGLPFPK DQPMGVYSSI WNADDWATQG
201: GRVKTDWSHA PFIASYKGFE IDACECPIAV AADDNAKRCS SSGEKRYWWD EPTLAELNLH QSHQLLWVRA NHMVYDYCTD SARFPATPVE CQHHRH

Best Arabidopsis Sequence Match ( AT4G03210.1 )
(BLAST)

001: MVGMDLFKCV MMIMVLVVSC GEAVSGAKFD ELYRSSWAMD HCVNEGEVTK LKLDNYSGAG FESRSKYLFG KVSIQIKLVE GDSAGTVTAF YMSSDGPNHN
101: EFDFEFLGNT TGEPYIVQTN IYVNGVGNRE QRLNLWFDPT TEFHTYSILW SKRSVVFMVD ETPIRVQKNL EEKGIPFAKD QAMGVYSSIW NADDWATQGG
201: LVKTDWSHAP FVASYKEFQI DACEIPTTTD LSKCNGDQKF WWDEPTVSEL SLHQNHQLIW VRANHMIYDY CFDATRFPVT PLECQHHRHL

Arabidopsis Description

XTH9Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178V222]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.