Factsheet for VIT_05s0062g00240.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol, extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0028g02240.t01
VIT_18s0001g09830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14130.1	VIT_12s0028g02240.t01	AT2G42580.1	19000166
AT4G14130.1	VIT_18s0001g09830.t01	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0062g00480.t01	Wine grape	cytosol	87.54	92.83
VIT_05s0062g00610.t01	Wine grape	cytosol	86.83	92.08
VIT_05s0062g00250.t01	Wine grape	extracellular	84.34	84.95
KRH31558	Soybean	nucleus	78.65	80.07
KRG97361	Soybean	nucleus	79.36	79.93
KRH42721	Soybean	extracellular, nucleus	79.72	79.15
KRH58823	Soybean	extracellular, nucleus	79.72	79.15
VIT_10s0003g02440.t01	Wine grape	extracellular	75.09	77.29
Solyc09g092520.2.1	Tomato	nucleus	75.8	77.17
PGSC0003DMT400056316	Potato	extracellular	75.09	76.45
Solyc12g098610.1.1	Tomato	nucleus	70.82	76.25
AT4G14130.1	Thale cress	extracellular	74.73	72.66
Bra038442.1-P	Field mustard	extracellular	74.38	72.32
CDY61576	Canola	vacuole	71.89	72.14
PGSC0003DMT400011902	Potato	extracellular	71.53	72.04
CDY27126	Canola	extracellular	74.02	71.97
VIT_11s0052g01280.t01	Wine grape	endoplasmic reticulum, extracellular	75.09	71.28
VIT_11s0052g01220.t01	Wine grape	extracellular	72.24	71.23
VIT_11s0052g01320.t01	Wine grape	extracellular	74.73	70.95
Bra014975.1-P	Field mustard	extracellular, vacuole	72.95	70.45
VIT_11s0052g01250.t01	Wine grape	extracellular	72.24	70.24
VIT_11s0052g01330.t01	Wine grape	extracellular, vacuole	65.12	69.85
AT3G23730.1	Thale cress	extracellular, vacuole	72.24	69.76
VIT_11s0052g01260.t01	Wine grape	endoplasmic reticulum, extracellular	73.31	69.59
VIT_11s0052g01200.t01	Wine grape	extracellular	73.31	69.36
VIT_11s0052g01300.t01	Wine grape	extracellular	72.95	69.26
VIT_11s0052g01270.t01	Wine grape	extracellular	71.53	67.68
VIT_11s0052g01310.t01	Wine grape	extracellular	64.06	66.91
VIT_11s0052g01340.t01	Wine grape	extracellular	64.06	66.18
VIT_11s0052g01230.t01	Wine grape	cytosol	64.06	64.75
CDY12366	Canola	extracellular	63.35	62.68
VIT_11s0052g01180.t01	Wine grape	cytosol	70.82	61.99
VIT_11s0052g01190.t01	Wine grape	vacuole	71.89	54.74
VIT_01s0150g00460.t01	Wine grape	extracellular	54.45	49.84
VIT_11s0016g03480.t01	Wine grape	extracellular	50.89	49.14
VIT_17s0053g00610.t01	Wine grape	cytosol	37.01	48.15
VIT_03s0088g00650.t01	Wine grape	extracellular, vacuole	46.62	44.41
VIT_12s0134g00160.t01	Wine grape	extracellular	46.26	43.92
VIT_10s0116g00520.t01	Wine grape	extracellular, vacuole	44.13	41.33
VIT_11s0052g01210.t01	Wine grape	extracellular, plastid	66.19	11.75

Protein Annotations

EntrezGene:100250461	wikigene:100250461	Gene3D:2.60.120.200	MapMan:50.2.4	ProteinID:CCB61765	ProteinID:CCB61765.1
InterPro:ConA-like_dom_sf	UniProt:F6I4C8	EMBL:FN596745	InterPro:GH16	InterPro:GH16_AS	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0005975	GO:GO:0006073	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010411
GO:GO:0016043	GO:GO:0016740	GO:GO:0016762	GO:GO:0016787	GO:GO:0016798	GO:GO:0030312
GO:GO:0042546	GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757	EntrezGene:LOC100250461	wikigene:LOC100250461
PFAM:PF00722	PFAM:PF06955	PIRSF:PIRSF005604	ScanProsite:PS01034	PFscan:PS51762	PANTHER:PTHR31062
PANTHER:PTHR31062:SF62	SUPFAM:SSF49899	SignalP:SignalP-noTM	TIGR:TC59417	TMHMM:TMhelix	UniParc:UPI000210890E
ArrayExpress:VIT_05s0062g00240	EnsemblPlantsGene:VIT_05s0062g00240	EnsemblPlants:VIT_05s0062g00240.t01	InterPro:XET_C	RefSeq:XP_002267890	RefSeq:XP_002267890.2
InterPro:XTH	SEG:seg	:	:	:	:

Description

Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:F6I4C8]

Coordinates

chr5:+:18396922..18398527

Molecular Weight (calculated)

32144.7 Da

IEP (calculated)

9.485

GRAVY (calculated)

-0.389

Length

281 amino acids

Sequence
(BLAST)

001: MGSSSNGYSV FLLLFAVVVA TASASNFYQD FDLTWGDNRA KIFNGGQLLS LSLDQASGSG FQSKKEYLFG RIDMQLKLVA GNSAGTVTAY YLSSQGSTHD
101: EIDFEFLGNL SGDPYILHTN VFTQGKGNRE QQFYLWFDPT RNFHTYSIIW TARHIIFLVD NVPIRLFKNA ESMGVPFPKN QPMRIYSSLW NADDWATRGG
201: LVKTDWSKAP FTAYYRNFRA NSSTPTSSFP DSTFQTQELD SYSRRRLRWV QKNFMIYNYC TDLKRFPQGV PAECKRSRFN L

Best Arabidopsis Sequence Match ( AT4G14130.1 )
(BLAST)

001: MGPSSSLTTI VATVLLVTLF GSAYASNFFD EFDLTWGDHR GKIFNGGNML SLSLDQVSGS GFKSKKEYLF GRIDMQLKLV AGNSAGTVTA YYLSSQGATH
101: DEIDFEFLGN ETGKPYVLHT NVFAQGKGDR EQQFYLWFDP TKNFHTYSIV WRPQHIIFLV DNLPIRVFNN AEKLGVPFPK SQPMRIYSSL WNADDWATRG
201: GLVKTDWSKA PFTAYYRGFN AAACTASSGC DPKFKSSFGD GKLQVATELN AYGRRRLRWV QKYFMIYNYC SDLKRFPRGF PPECKKSRV

Arabidopsis Description

XTH15Xyloglucan endotransglucosylase/hydrolase protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q38911]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.