Factsheet for VIT_11s0052g01270.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
nucleus 1
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, extracellular
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0052g01340.t01	Wine grape	extracellular	85.19	93.01
VIT_11s0052g01200.t01	Wine grape	extracellular	91.92	91.92
VIT_11s0052g01330.t01	Wine grape	extracellular, vacuole	80.13	90.84
VIT_11s0052g01310.t01	Wine grape	extracellular	78.45	86.62
VIT_11s0052g01280.t01	Wine grape	endoplasmic reticulum, extracellular	85.19	85.47
VIT_11s0052g01320.t01	Wine grape	extracellular	85.19	85.47
VIT_11s0052g01260.t01	Wine grape	endoplasmic reticulum, extracellular	84.85	85.14
VIT_11s0052g01300.t01	Wine grape	extracellular	84.18	84.46
VIT_11s0052g01220.t01	Wine grape	extracellular	80.13	83.51
VIT_11s0052g01180.t01	Wine grape	cytosol	86.87	80.37
Solyc03g093080.2.1	Tomato	extracellular	74.41	77.27
VIT_11s0052g01250.t01	Wine grape	extracellular	75.08	77.16
PGSC0003DMT400038413	Potato	extracellular	74.07	76.92
Solyc03g093130.2.1	Tomato	extracellular	74.07	76.66
Solyc03g093120.2.1	Tomato	extracellular	73.4	76.22
Solyc03g093110.2.1	Tomato	extracellular	73.06	75.61
VIT_05s0062g00610.t01	Wine grape	cytosol	67.34	75.47
VIT_05s0062g00480.t01	Wine grape	cytosol	67.34	75.47
VIT_10s0003g02440.t01	Wine grape	extracellular	68.69	74.73
VIT_05s0062g00250.t01	Wine grape	extracellular	70.03	74.55
VIT_11s0052g01230.t01	Wine grape	cytosol	69.36	74.1
VIT_05s0062g00240.t01	Wine grape	extracellular	67.68	71.53
VIT_11s0052g01190.t01	Wine grape	vacuole	87.21	70.19
VIT_11s0016g03480.t01	Wine grape	extracellular	51.85	52.92
VIT_17s0053g00610.t01	Wine grape	cytosol	36.7	50.46
VIT_01s0150g00460.t01	Wine grape	extracellular	50.84	49.19
VIT_03s0088g00650.t01	Wine grape	extracellular, vacuole	48.15	48.47
VIT_12s0134g00160.t01	Wine grape	extracellular	45.12	45.27
VIT_10s0116g00520.t01	Wine grape	extracellular, vacuole	43.1	42.67
VIT_11s0052g01210.t01	Wine grape	extracellular, plastid	71.04	13.33

Protein Annotations

EntrezGene:100242697	wikigene:100242697	EntrezGene:100246166	wikigene:100246166	Gene3D:2.60.120.200	MapMan:50.2.4
ProteinID:CCB44627	ProteinID:CCB44627.1	InterPro:ConA-like_dom_sf	UniProt:F6GXE1	EMBL:FN594964	InterPro:GH16
InterPro:GH16_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576
GO:GO:0005618	GO:GO:0005623	GO:GO:0005975	GO:GO:0006073	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010411	GO:GO:0016043	GO:GO:0016740	GO:GO:0016762	GO:GO:0016787
GO:GO:0016798	GO:GO:0030312	GO:GO:0042546	GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757
EntrezGene:LOC100242697	wikigene:LOC100242697	EntrezGene:LOC100246166	wikigene:LOC100246166	PFAM:PF00722	PFAM:PF06955
PIRSF:PIRSF005604	ScanProsite:PS01034	PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF100	SUPFAM:SSF49899
SignalP:SignalP-noTM	TIGR:TC63145	TMHMM:TMhelix	UniParc:UPI00015CB3A5	ArrayExpress:VIT_11s0052g01270	EnsemblPlantsGene:VIT_11s0052g01270
EnsemblPlants:VIT_11s0052g01270.t01	unigene:Vvi.18856	unigene:Vvi.20010	InterPro:XET_C	RefSeq:XP_002274601	RefSeq:XP_002274601.1
RefSeq:XP_003633211	RefSeq:XP_003633211.1	InterPro:XTH	SEG:seg	:	:

Description

Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:F6GXE1]

Coordinates

chr11:+:18990291..18994128

Molecular Weight (calculated)

33157.5 Da

IEP (calculated)

4.759

GRAVY (calculated)

-0.361

Length

297 amino acids

Sequence
(BLAST)

001: MAPIYSSSSA VSTALLISVV VSFLMAASAG NFYQDFGITW GDGRAKILDN GEFLTLSLDK TSGSGFQSKN EYLFGKIDMQ LKLVPGNSAG TVTAYYLSSQ
101: GPTHDEIDFE FLGNLSGDPY ILHTNVFSQG KGNREQQFYL WFDPTADFHT YSILWNPQRI IFSVDGTPIR EFKNSESIGV PYLKNQPMRI YSSLWNADDW
201: ATRGGLIKTD WTQAPFTASY RNFNADACIW SSGASSCSSN TPTSISPSTD WYSQELDSTS QERMKWVQKN YMIYNYCTDT KRFPQGLPPE CTATTTS

Best Arabidopsis Sequence Match ( AT4G25810.1 )
(BLAST)

001: MAMISYSTIV VALLASFMIC SVSANFQRDV EITWGDGRGQ ITNNGDLLTL SLDKASGSGF QSKNEYLFGK IDMQIKLVAG NSAGTVTAYY LKSPGSTWDE
101: IDFEFLGNLS GDPYTLHTNV FTQGKGDREQ QFKLWFDPTS DFHTYSILWN PQRIIFSVDG TPIREFKNME SQGTLFPKNQ PMRMYSSLWN AEEWATRGGL
201: VKTDWSKAPF TASYRGFNEE ACVVINGQSS CPNVSGQGST GSWLSQELDS TGQEQMRWVQ NNYMIYNYCT DAKRFPQGLP RECLAA

Arabidopsis Description

XTH23Probable xyloglucan endotransglucosylase/hydrolase protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q38910]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.