Factsheet for VIT_10s0003g02440.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
cytosol 3
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 19822229

msms PMID: 19822229 doi

MJ Martinez-Esteso, S Sellés-Marchart, JC Vera-Urbina, MA Pedreño, R Bru-Martinez

Department of Agrochemistry and Biochemistry, University of Alicante, Spain.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0062g00480.t01	Wine grape	cytosol	76.92	79.25
VIT_05s0062g00610.t01	Wine grape	cytosol	76.92	79.25
VIT_05s0062g00250.t01	Wine grape	extracellular	76.92	75.27
VIT_05s0062g00240.t01	Wine grape	extracellular	77.29	75.09
VIT_11s0052g01330.t01	Wine grape	extracellular, vacuole	69.23	72.14
VIT_11s0052g01280.t01	Wine grape	endoplasmic reticulum, extracellular	76.92	70.95
VIT_11s0052g01200.t01	Wine grape	extracellular	76.92	70.71
VIT_11s0052g01320.t01	Wine grape	extracellular	76.56	70.61
VIT_11s0052g01220.t01	Wine grape	extracellular	73.63	70.53
VIT_11s0052g01300.t01	Wine grape	extracellular	75.46	69.59
VIT_11s0052g01260.t01	Wine grape	endoplasmic reticulum, extracellular	75.46	69.59
VIT_11s0052g01250.t01	Wine grape	extracellular	73.63	69.55
VIT_11s0052g01270.t01	Wine grape	extracellular	74.73	68.69
VIT_11s0052g01310.t01	Wine grape	extracellular	67.03	68.03
VIT_11s0052g01340.t01	Wine grape	extracellular	65.93	66.18
VIT_11s0052g01230.t01	Wine grape	cytosol	66.3	65.11
VIT_11s0052g01180.t01	Wine grape	cytosol	75.82	64.49
KRH42944	Soybean	extracellular	67.4	62.59
KRH59064	Soybean	extracellular	67.77	62.5
VIT_11s0052g01190.t01	Wine grape	vacuole	74.36	55.01
VIT_17s0053g00610.t01	Wine grape	cytosol	39.93	50.46
VIT_11s0016g03480.t01	Wine grape	extracellular	53.11	49.83
VIT_01s0150g00460.t01	Wine grape	extracellular	54.21	48.21
VIT_03s0088g00650.t01	Wine grape	extracellular, vacuole	47.99	44.41
VIT_12s0134g00160.t01	Wine grape	extracellular	47.25	43.58
VIT_10s0116g00520.t01	Wine grape	extracellular, vacuole	43.22	39.33
VIT_11s0052g01210.t01	Wine grape	extracellular, plastid	67.4	11.62

Protein Annotations

EntrezGene:100252173	wikigene:100252173	Gene3D:2.60.120.200	MapMan:50.2.4	InterPro:Beta_glucanase	ProteinID:CCB55744
ProteinID:CCB55744.1	InterPro:ConA-like_dom_sf	UniProt:F6HMF5	EMBL:FN595992	InterPro:GH16	InterPro:GH16_AS
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618
GO:GO:0005623	GO:GO:0005975	GO:GO:0006073	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010411	GO:GO:0016043	GO:GO:0016740	GO:GO:0016762	GO:GO:0016787	GO:GO:0016798
GO:GO:0030312	GO:GO:0042546	GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757	EntrezGene:LOC100252173
wikigene:LOC100252173	PFAM:PF00722	PFAM:PF06955	PIRSF:PIRSF005604	PRINTS:PR00737	ScanProsite:PS01034
PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF100	SUPFAM:SSF49899	UniParc:UPI0002108811	ArrayExpress:VIT_10s0003g02440
EnsemblPlantsGene:VIT_10s0003g02440	EnsemblPlants:VIT_10s0003g02440.t01	unigene:Vvi.14222	InterPro:XET_C	RefSeq:XP_002268708	RefSeq:XP_002268708.1
InterPro:XTH	:	:	:	:	:

Description

Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:F6HMF5]

Coordinates

chr10:+:4375930..4377117

Molecular Weight (calculated)

31416.1 Da

IEP (calculated)

9.736

GRAVY (calculated)

-0.481

Length

273 amino acids

Sequence
(BLAST)

001: MATASAGNFY QDFDLTWGDR RAKIVDGGKL LMLSLDRASG SGFQSKKEYL FGRIDMQLKL VSGNSAGTVT AYYLSSQGQT HDEIDFEFLG NLSGDPYILH
101: TNVFTQGKGN REQQFYLWFD PTKNFHTYSI IWNPQRIIFL VDNFPIRQFQ NQESIGIPFP KSQPMRIYSS LWNADNWATR GGVVKIDWSK APFTAFYRNF
201: NAAACIWSYG SSSCASKSVS PMSNIGWQTQ GLDAKSRRRL RWVQRYYMIY NYCTDMKRFP EGLPPECRRS RSL

Best Arabidopsis Sequence Match ( AT3G23730.1 )
(BLAST)

001: MGRILNRTVL MTLLVVTMAG TAFSGSFNEE FDLTWGEHRG KIFSGGKMLS LSLDRVSGSG FKSKKEYLFG RIDMQLKLVA GNSAGTVTAY YLSSEGPTHD
101: EIDFEFLGNE TGKPYVLHTN VFAQGKGNRE QQFYLWFDPT KNFHTYSLVW RPQHIIFMVD NVPIRVFNNA EQLGVPFPKN QPMKIYSSLW NADDWATRGG
201: LVKTDWSKAP FTAYYRGFNA AACTVSSGSS FCDPKFKSSF TNGESQVANE LNAYGRRRLR WVQKYFMIYD YCSDLKRFPQ GFPPECRKSR V

Arabidopsis Description

XTH16Probable xyloglucan endotransglucosylase/hydrolase protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG58]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.