Factsheet for VIT_01s0150g00460.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
vacuole 3
extracellular 4
cytosol 1
endoplasmic reticulum 2
plasma membrane 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	vacuole
Plant-mPloc:	cytosol, extracellular
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 23391302

msms PMID: 23391302 doi

B Delaunois, T Colby, N Belloy, A Conreux, A Harzen, F Baillieul, C Clément, J Schmidt, P Jeandet, S Cordelier

Université de Reims Champagne-Ardenne, UFR Sciences Exactes et Naturelles, Unité de Recherche Vigne et Vins de Champagne - EA 4707, Laboratoire de Stress, Défenses et Reproduction des Plantes, B,P, 1039, Reims, cedex 02, 51687, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P34300_001	Banana	cytosol	74.92	83.94
Bra008796.1-P	Field mustard	cytosol, extracellular, nucleus	74.92	82.44
CDX69621	Canola	vacuole	76.22	79.86
AT5G13870.2	Thale cress	extracellular, vacuole	76.22	79.86
Bra006220.1-P	Field mustard	vacuole	75.9	79.52
CDY09832	Canola	vacuole	75.9	79.52
CDX78542	Canola	vacuole	76.22	78.52
TraesCS4D01G142800.1	Wheat	extracellular	74.59	77.89
TraesCS4A01G172600.1	Wheat	unclear	74.59	77.89
CDX70524	Canola	vacuole	75.57	77.85
TraesCSU01G175000.1	Wheat	vacuole	74.27	77.55
Zm00001d052651_P001	Maize	extracellular	73.94	76.43
HORVU4Hr1G028720.1	Barley	extracellular, vacuole	73.94	75.17
OQU83588	Sorghum	extracellular	73.62	74.59
Os11t0539200-01	Rice	extracellular	71.34	74.24
VIT_11s0052g01330.t01	Wine grape	extracellular, vacuole	49.19	57.63
VIT_05s0062g00480.t01	Wine grape	cytosol	48.86	56.6
VIT_05s0062g00610.t01	Wine grape	cytosol	48.86	56.6
VIT_05s0062g00240.t01	Wine grape	extracellular	49.84	54.45
VIT_10s0003g02440.t01	Wine grape	extracellular	48.21	54.21
VIT_05s0062g00250.t01	Wine grape	extracellular	49.19	54.12
VIT_11s0052g01320.t01	Wine grape	extracellular	51.47	53.38
VIT_11s0052g01220.t01	Wine grape	extracellular	49.51	53.33
VIT_11s0052g01250.t01	Wine grape	extracellular	49.84	52.94
VIT_11s0052g01280.t01	Wine grape	endoplasmic reticulum, extracellular	50.81	52.7
VIT_11s0052g01260.t01	Wine grape	endoplasmic reticulum, extracellular	50.81	52.7
VIT_11s0052g01300.t01	Wine grape	extracellular	50.49	52.36
VIT_17s0053g00610.t01	Wine grape	cytosol	36.48	51.85
VIT_11s0052g01310.t01	Wine grape	extracellular	45.28	51.67
VIT_11s0052g01200.t01	Wine grape	extracellular	49.51	51.18
VIT_11s0052g01270.t01	Wine grape	extracellular	49.19	50.84
VIT_11s0052g01230.t01	Wine grape	cytosol	45.6	50.36
VIT_11s0052g01340.t01	Wine grape	extracellular	43.65	49.26
VIT_12s0134g00160.t01	Wine grape	extracellular	46.91	48.65
VIT_10s0116g00520.t01	Wine grape	extracellular, vacuole	46.58	47.67
VIT_11s0052g01180.t01	Wine grape	cytosol	49.51	47.35
VIT_03s0088g00650.t01	Wine grape	extracellular, vacuole	43.97	45.76
VIT_11s0016g03480.t01	Wine grape	extracellular	42.35	44.67
VIT_11s0052g01190.t01	Wine grape	vacuole	52.77	43.9
GSMUA_Achr7P02620_001	Banana	endoplasmic reticulum, extracellular	62.22	43.21
VIT_11s0052g01210.t01	Wine grape	extracellular, plastid	47.88	9.29

Protein Annotations

EntrezGene:100232906	wikigene:100232906	Gene3D:2.60.120.200	MapMan:50.2.4	ProteinID:AAK81881	ProteinID:AAK81881.1
EMBL:AY043238	ProteinID:CCB52285	ProteinID:CCB52285.1	InterPro:ConA-like_dom_sf	UniProt:F6HJ88	EMBL:FN595770
InterPro:GH16	InterPro:GH16_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975	GO:GO:0006073	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010411	GO:GO:0016043	GO:GO:0016740	GO:GO:0016762
GO:GO:0016787	GO:GO:0016798	GO:GO:0030312	GO:GO:0042546	GO:GO:0048046	GO:GO:0071555
InterPro:IPR000757	EntrezGene:LOC100232906	wikigene:LOC100232906	PFAM:PF00722	PFAM:PF06955	PIRSF:PIRSF005604
ScanProsite:PS01034	PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF97	SUPFAM:SSF49899	SignalP:SignalP-noTM
TIGR:TC56669	UniParc:UPI0001982AF1	ArrayExpress:VIT_01s0150g00460	EnsemblPlantsGene:VIT_01s0150g00460	EnsemblPlants:VIT_01s0150g00460.t01	unigene:Vvi.2154
InterPro:XET_C	RefSeq:XP_002274520	RefSeq:XP_002274520.1	InterPro:XTH	SEG:seg	:

Description

Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:F6HJ88]

Coordinates

chr1:+:22826415..22828725

Molecular Weight (calculated)

35271.9 Da

IEP (calculated)

8.636

GRAVY (calculated)

-0.366

Length

307 amino acids

Sequence
(BLAST)

001: MLTTLPQSLP LGTKMASCLW LLSLGLLFMV SGARGAAPRK PIDVPFGRNY VPTWAFDHIK SYNGGSEIQL VLDKYTGTGF QSKGSYLFGH FSMQIKMVPG
101: DSAGTVTAFY LSSQNSEHDE IDFEFLGNRS GQPYILQTNV FTGGKGDREQ RIYLWFDPTK AFHSYSVLWN TFLIIFLVDD VPIRVFKNSK DLGVKFPFDQ
201: PMKIYSSLWN ADDWATRGGL EKTDWSKAPF VASYKSFHVD GCEASVEAKF CATQGKRWWD QREFQDLDSL QYRRLAWVRQ KYTIYNYCTD RVRYPTMPPE
301: CKRDRDV

Best Arabidopsis Sequence Match ( AT5G13870.3 )
(BLAST)

001: MGRLSSTLCL TFLILATVAF GVPPKKSINV PFGRNYFPTW AFDHIKYLNG GSEVHLVLDK YTGTGFQSKG SYLFGHFSMH IKMVAGDSAG TVTAFYLSSQ
101: NSEHDEIDFE FLGNRTGQPY ILQTNVFTGG AGNREQRINL WFDPSKDYHS YSVLWNMYQI VFFVDDVPIR VFKNSKDVGV KFPFNQPMKI YSSLWNADDW
201: ATRGGLEKTN WEKAPFVASY RGFHVDGCEA SVNAKFCETQ GKRWWDQKEF QDLDANQYKR LKWVRKRYTI YNYCTDRVRF PVPPPECRRD RDI

Arabidopsis Description

XTH5Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:Q67Z90]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.