Factsheet for Bra008796.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, extracellular
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69621	Canola	vacuole	99.64	94.88
CDY09832	Canola	vacuole	98.92	94.2
AT5G13870.2	Thale cress	extracellular, vacuole	95.34	90.78
Bra006220.1-P	Field mustard	vacuole	94.98	90.44
GSMUA_Achr8P34300_001	Banana	cytosol	80.65	82.12
Bra013164.1-P	Field mustard	extracellular	79.93	75.59
VIT_01s0150g00460.t01	Wine grape	extracellular	82.44	74.92
TraesCSU01G175000.1	Wheat	vacuole	78.49	74.49
TraesCS4A01G172600.1	Wheat	unclear	78.14	74.15
TraesCS4D01G142800.1	Wheat	extracellular	77.78	73.81
Zm00001d052651_P001	Maize	extracellular	77.42	72.73
Os11t0539200-01	Rice	extracellular	75.99	71.86
HORVU4Hr1G028720.1	Barley	extracellular, vacuole	77.42	71.52
OQU83588	Sorghum	extracellular	76.7	70.63
Bra011179.1-P	Field mustard	extracellular	51.25	50.71
Bra038442.1-P	Field mustard	extracellular	52.33	50.52
Bra013922.1-P	Field mustard	extracellular	51.61	50.17
Bra008806.1-P	Field mustard	extracellular	51.61	50.17
Bra024089.1-P	Field mustard	extracellular	49.82	49.82
Bra014975.1-P	Field mustard	extracellular, vacuole	51.61	49.48
Bra002719.1-P	Field mustard	extracellular	50.18	49.47
Bra024415.1-P	Field mustard	extracellular	50.18	49.12
Bra020436.1-P	Field mustard	extracellular	49.1	48.41
Bra000840.1-P	Field mustard	extracellular	50.18	48.28
Bra038819.1-P	Field mustard	cytosol, extracellular, nucleus	41.22	48.12
Bra017855.1-P	Field mustard	extracellular, vacuole	50.18	47.95
Bra002723.1-P	Field mustard	extracellular	49.1	47.9
Bra019846.1-P	Field mustard	extracellular	51.25	47.83
Bra020434.1-P	Field mustard	extracellular	48.75	47.72
Bra020433.1-P	Field mustard	extracellular	44.44	47.69
Bra002722.1-P	Field mustard	extracellular	48.39	47.54
Bra013923.1-P	Field mustard	extracellular	47.31	46.48
Bra020432.1-P	Field mustard	extracellular	46.59	45.94
Bra019141.1-P	Field mustard	extracellular	46.24	45.1
Bra006814.1-P	Field mustard	extracellular	48.03	42.01
Bra011066.1-P	Field mustard	extracellular	43.73	41.78
Bra040716.1-P	Field mustard	vacuole	44.44	41.75
GSMUA_Achr7P02620_001	Banana	endoplasmic reticulum, extracellular	65.59	41.4
Bra034193.1-P	Field mustard	cytosol	49.46	40.12

Protein Annotations

Gene3D:2.60.120.200	MapMan:50.2.4	EnsemblPlantsGene:Bra008796	EnsemblPlants:Bra008796.1	EnsemblPlants:Bra008796.1-P	InterPro:ConA-like_dom_sf
InterPro:GH16	InterPro:GH16_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975	GO:GO:0006073	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010411	GO:GO:0016043	GO:GO:0016740	GO:GO:0016762
GO:GO:0016787	GO:GO:0016798	GO:GO:0030312	GO:GO:0042546	GO:GO:0048046	GO:GO:0071555
InterPro:IPR000757	UniProt:M4CX49	PFAM:PF00722	PFAM:PF06955	PIRSF:PIRSF005604	ScanProsite:PS01034
PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF97	SUPFAM:SSF49899	UniParc:UPI0002543776	InterPro:XET_C
InterPro:XTH	:	:	:	:	:

Description

AT5G13870 (E=1e-165) EXGT-A4 | EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase

Coordinates

chrA10:+:13865558..13866783

Molecular Weight (calculated)

32480.2 Da

IEP (calculated)

8.974

GRAVY (calculated)

-0.558

Length

279 amino acids

Sequence
(BLAST)

001: MATVTFGVPP KKAVDVPFGR NYFPTWAFDH IKYLNGGSEV HLFLDKYTGT GFQSKGSYLF GHFSMHIKMV PGDSAGTVTA FYLSSQSSEH DEIDFEFLGN
101: RTGQPYILQT NVFTGGKGNR EQRINLWFDP SKDYHSYSVL WNMYQIVFFV DDVPIRVFKN SKDIGVKFPF NQPMKIYSSL WNADDWATRG GLEKTNWAKA
201: PFVASYRGFH VDGCEASVNA KFCETQGKRW WDQKEFQDLD AQQYKRLKWV RTRYTIYNYC TDRVRFPVPP PECRRDRDI

Best Arabidopsis Sequence Match ( AT5G13870.3 )
(BLAST)

001: MGRLSSTLCL TFLILATVAF GVPPKKSINV PFGRNYFPTW AFDHIKYLNG GSEVHLVLDK YTGTGFQSKG SYLFGHFSMH IKMVAGDSAG TVTAFYLSSQ
101: NSEHDEIDFE FLGNRTGQPY ILQTNVFTGG AGNREQRINL WFDPSKDYHS YSVLWNMYQI VFFVDDVPIR VFKNSKDVGV KFPFNQPMKI YSSLWNADDW
201: ATRGGLEKTN WEKAPFVASY RGFHVDGCEA SVNAKFCETQ GKRWWDQKEF QDLDANQYKR LKWVRKRYTI YNYCTDRVRF PVPPPECRRD RDI

Arabidopsis Description

XTH5Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:Q67Z90]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.