Factsheet for TraesCS4A01G172600.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G175000.1	Wheat	vacuole	99.32	99.32
TraesCS4D01G142800.1	Wheat	extracellular	99.32	99.32
HORVU4Hr1G028720.1	Barley	extracellular, vacuole	96.6	94.04
Os11t0539200-01	Rice	extracellular	86.73	86.44
Zm00001d052651_P001	Maize	extracellular	86.39	85.52
OQU83588	Sorghum	extracellular	87.42	84.82
GSMUA_Achr8P34300_001	Banana	cytosol	78.23	83.94
Bra008796.1-P	Field mustard	cytosol, extracellular, nucleus	74.15	78.14
AT5G13870.2	Thale cress	extracellular, vacuole	74.83	75.09
CDX69621	Canola	vacuole	74.83	75.09
CDY09832	Canola	vacuole	74.49	74.74
VIT_01s0150g00460.t01	Wine grape	extracellular	77.89	74.59
CDY69237	Canola	extracellular	74.15	73.9
Bra006220.1-P	Field mustard	vacuole	73.47	73.72
Bra013164.1-P	Field mustard	extracellular	73.81	73.56
CDX93096	Canola	extracellular	73.47	73.22
KRG94750	Soybean	endoplasmic reticulum	73.47	73.22
KRH06776	Soybean	endoplasmic reticulum	73.13	72.88
CDX78542	Canola	vacuole	73.47	72.48
CDX70524	Canola	vacuole	72.79	71.81
AT2G06850.1	Thale cress	extracellular	72.11	71.62
PGSC0003DMT400005591	Potato	extracellular	71.43	70.95
KRH70105	Soybean	nucleus	74.49	70.87
Solyc11g040140.1.1	Tomato	extracellular	71.09	69.67
KRG94748	Soybean	extracellular, vacuole	58.84	66.8
KRH06775	Soybean	endoplasmic reticulum	74.83	63.77
TraesCS7A01G427600.1	Wheat	extracellular	52.38	53.29
TraesCS7A01G427300.1	Wheat	extracellular	48.98	50.53
TraesCS7A01G427100.1	Wheat	extracellular	48.64	50.18
TraesCS7A01G426100.1	Wheat	vacuole	49.32	50.17
TraesCS7A01G427000.1	Wheat	extracellular	48.64	50.0
TraesCS7A01G426600.1	Wheat	vacuole	49.32	50.0
TraesCS7A01G426900.1	Wheat	extracellular	47.96	49.3
TraesCS7A01G426700.1	Wheat	extracellular	47.96	48.79
TraesCS7A01G331200.1	Wheat	vacuole	42.52	43.86
TraesCS2A01G433800.1	Wheat	endoplasmic reticulum, extracellular	40.82	42.86
GSMUA_Achr7P02620_001	Banana	endoplasmic reticulum, extracellular	63.61	42.31
TraesCS7A01G427200.1	Wheat	extracellular, vacuole	41.84	41.69
TraesCS2A01G498400.1	Wheat	vacuole	40.48	41.18
TraesCS2A01G498300.1	Wheat	vacuole	40.48	41.18
TraesCS2A01G498500.1	Wheat	vacuole	40.82	41.1
TraesCS2A01G498200.1	Wheat	extracellular	40.14	40.83
TraesCS2A01G434300.1	Wheat	extracellular	41.5	40.26
TraesCS2A01G089000.1	Wheat	extracellular	38.44	39.79
TraesCS2A01G433600.1	Wheat	vacuole	39.8	39.53
TraesCS2A01G047100.1	Wheat	endoplasmic reticulum, extracellular	39.12	39.52
TraesCS2A01G047200.1	Wheat	vacuole	38.78	39.31
TraesCS7A01G463800.1	Wheat	extracellular	37.41	38.6
TraesCS2A01G433500.1	Wheat	mitochondrion	43.88	38.51
TraesCS6A01G337600.1	Wheat	extracellular	38.1	37.97
TraesCS2A01G433700.1	Wheat	vacuole	38.1	37.84

Protein Annotations

Gene3D:2.60.120.200	MapMan:50.2.4	InterPro:ConA-like_dom_sf	InterPro:GH16	InterPro:GH16_AS	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0005975	GO:GO:0006073	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010411
GO:GO:0016740	GO:GO:0016762	GO:GO:0016787	GO:GO:0030312	GO:GO:0042546	GO:GO:0048046
InterPro:IPR000757	PFAM:PF00722	PFAM:PF06955	PIRSF:PIRSF005604	ScanProsite:PS01034	PFscan:PS51762
PANTHER:PTHR31062	PANTHER:PTHR31062:SF97	SUPFAM:SSF49899	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS4A01G172600	EnsemblPlants:TraesCS4A01G172600.1
InterPro:XET_C	InterPro:XTH	TIGR:cd02176	SEG:seg	:	:

Description

No Description!

Coordinates

chr4A:+:438394892..438398770

Molecular Weight (calculated)

33521.2 Da

IEP (calculated)

7.008

GRAVY (calculated)

-0.496

Length

294 amino acids

Sequence
(BLAST)

001: MKATAGALLA VVAAVLLRGV AAAPPRKPVD VPFDKNYVPT WAQDHIHYVN GGREVQLSLD KTTGTGFQTR GSYLFGHFSM HIKLVGGDSA GTVTAFYLSS
101: QNSEHDEIDF EFLGNRTGQP YILQTNVFSG GKGDREQRIY LWFDPTKDYH SYSVLWNLYM IAFFVDDTPI RVFKNSKDLG VRYPFDQPMK LYSSLWNADD
201: WATRGGREKT DWSKAPFVAS YRGFHVDGCE ASAEAKFCAT QGARWWDQPE FQDLDAAQYR RLAWVRKEHT IYNYCTDHDR YAAMAPECKR DRDV

Best Arabidopsis Sequence Match ( AT5G13870.3 )
(BLAST)

001: MGRLSSTLCL TFLILATVAF GVPPKKSINV PFGRNYFPTW AFDHIKYLNG GSEVHLVLDK YTGTGFQSKG SYLFGHFSMH IKMVAGDSAG TVTAFYLSSQ
101: NSEHDEIDFE FLGNRTGQPY ILQTNVFTGG AGNREQRINL WFDPSKDYHS YSVLWNMYQI VFFVDDVPIR VFKNSKDVGV KFPFNQPMKI YSSLWNADDW
201: ATRGGLEKTN WEKAPFVASY RGFHVDGCEA SVNAKFCETQ GKRWWDQKEF QDLDANQYKR LKWVRKRYTI YNYCTDRVRF PVPPPECRRD RDI

Arabidopsis Description

XTH5Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:Q67Z90]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.