CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol, extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06776	Soybean	endoplasmic reticulum	87.46	87.46
KRH70105	Soybean	nucleus	87.12	83.17
KRH06775	Soybean	endoplasmic reticulum	96.27	82.32
KRG94748	Soybean	extracellular, vacuole	71.19	81.08
GSMUA_Achr8P34300_001	Banana	cytosol	74.92	80.66
PGSC0003DMT400005591	Potato	extracellular	74.92	74.66
Solyc11g040140.1.1	Tomato	extracellular	75.25	74.0
AT2G06850.1	Thale cress	extracellular	74.24	73.99
Bra013164.1-P	Field mustard	extracellular	73.9	73.9
CDX93096	Canola	extracellular	73.9	73.9
CDY69237	Canola	extracellular	73.56	73.56
TraesCSU01G175000.1	Wheat	vacuole	73.22	73.47
TraesCS4D01G142800.1	Wheat	extracellular	73.22	73.47
TraesCS4A01G172600.1	Wheat	unclear	73.22	73.47
Zm00001d052651_P001	Maize	extracellular	73.56	73.06
Os11t0539200-01	Rice	extracellular	72.54	72.54
HORVU4Hr1G028720.1	Barley	extracellular, vacuole	72.88	71.19
OQU83588	Sorghum	extracellular	72.88	70.96
KRH42721	Soybean	extracellular, nucleus	49.49	51.59
KRH19002	Soybean	extracellular	49.49	51.23
KRH31558	Soybean	nucleus	47.8	51.09
KRH58823	Soybean	extracellular, nucleus	48.81	50.88
KRH19136	Soybean	nucleus	48.47	50.53
KRH37378	Soybean	nucleus	45.42	50.38
KRG97361	Soybean	nucleus	47.46	50.18
KRH02892	Soybean	extracellular	48.14	49.48
KRH02893	Soybean	extracellular	47.46	49.12
KRH02890	Soybean	extracellular	47.46	49.12
KRH19005	Soybean	vacuole	47.46	49.12
KRH02894	Soybean	endoplasmic reticulum, extracellular	48.47	48.97
KRH25426	Soybean	extracellular	49.15	48.66
KRH58172	Soybean	extracellular, vacuole	47.8	48.45
KRH77174	Soybean	extracellular	48.47	48.31
KRH22496	Soybean	extracellular	47.46	48.28
KRH19003	Soybean	extracellular	46.78	48.08
KRH04364	Soybean	extracellular	47.46	47.95
KRH56088	Soybean	vacuole	48.14	47.81
KRH02895	Soybean	cytosol	47.46	47.78
KRH26853	Soybean	vacuole	47.8	47.64
KRH02889	Soybean	extracellular	46.44	47.08
KRH41530	Soybean	nucleus	45.08	47.0
KRH28311	Soybean	extracellular, vacuole	47.12	46.8
KRH19006	Soybean	vacuole	46.1	46.42
KRG91233	Soybean	extracellular	46.44	45.51
KRH42944	Soybean	extracellular	44.75	44.9
KRH35587	Soybean	extracellular	45.76	44.7
KRH59064	Soybean	extracellular	44.41	44.26
KRG98913	Soybean	vacuole	42.71	43.75
KRH39331	Soybean	nucleus	42.71	43.6
KRH35625	Soybean	vacuole	43.73	43.58
KRG91154	Soybean	extracellular	43.39	43.24
KRH76320	Soybean	nucleus	42.03	42.91
KRH12375	Soybean	extracellular	45.42	42.41
KRH14468	Soybean	extracellular	40.68	41.67
GSMUA_Achr7P02620_001	Banana	endoplasmic reticulum, extracellular	62.37	41.63
KRH73676	Soybean	extracellular	39.66	41.34

Protein Annotations

EntrezGene:100778482	Gene3D:2.60.120.200	MapMan:50.2.4	EMBL:ACUP02012029	InterPro:ConA-like_dom_sf	InterPro:GH16
InterPro:GH16_AS	EnsemblPlantsGene:GLYMA_19G106700	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975	GO:GO:0006073	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010411	GO:GO:0016043	GO:GO:0016740	GO:GO:0016762
GO:GO:0016787	GO:GO:0016798	GO:GO:0030312	GO:GO:0042546	GO:GO:0048046	GO:GO:0071555
UniProt:I1N842	InterPro:IPR000757	EnsemblPlants:KRG94750	ProteinID:KRG94750	ProteinID:KRG94750.1	PFAM:PF00722
PFAM:PF06955	PIRSF:PIRSF005604	ScanProsite:PS01034	PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF97
SUPFAM:SSF49899	SignalP:SignalP-noTM	UniParc:UPI000233E030	InterPro:XET_C	InterPro:XTH	SEG:seg

Description

hypothetical protein

Coordinates

chr19:+:35786109..35788403

Molecular Weight (calculated)

34166.1 Da

IEP (calculated)

7.817

GRAVY (calculated)

-0.485

Length

295 amino acids

Sequence
(BLAST)

001: MGSSSSIWTV CLILASLASA ALCANPRRPV DVQFGRNYVP TWAFDHIKYF NGGSDIQLHL DKYTGTGFQS KGSYLFGHFS MYIKMVPGDS AGTVTAFYLS
101: SQNAEHDEID FEFLGNRTGQ PYILQTNVFT GGKGDREQRI YLWFDPTKEY HRYSILWNLY QIVFFVDDVA IRVFKNSKDL GVKFPFDQPM KIYNSLWNAD
201: DWATRGGLEK TDWSKAPFIA AYKGFHIDGC EASVNAKFCD TQGKSWWDQP EFRDLDASQW RSLRWVRQKY TIYNYCTDRK RYPQLSPECK PDRDI

Best Arabidopsis Sequence Match ( AT5G13870.3 )
(BLAST)

001: MGRLSSTLCL TFLILATVAF GVPPKKSINV PFGRNYFPTW AFDHIKYLNG GSEVHLVLDK YTGTGFQSKG SYLFGHFSMH IKMVAGDSAG TVTAFYLSSQ
101: NSEHDEIDFE FLGNRTGQPY ILQTNVFTGG AGNREQRINL WFDPSKDYHS YSVLWNMYQI VFFVDDVPIR VFKNSKDVGV KFPFNQPMKI YSSLWNADDW
201: ATRGGLEKTN WEKAPFVASY RGFHVDGCEA SVNAKFCETQ GKRWWDQKEF QDLDANQYKR LKWVRKRYTI YNYCTDRVRF PVPPPECRRD RDI

Arabidopsis Description

XTH5Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:Q67Z90]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.