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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 1
  • extracellular 6
  • endoplasmic reticulum 4
  • vacuole 5
  • plasma membrane 4
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:extracellular
 nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G14130.1 KRH22291 AT2G42580.1 19000166
AT4G14130.1 KRH27037 AT2G42580.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG97361 Soybean nucleus 96.01 94.98
KRH58823 Soybean extracellular, nucleus 84.78 82.69
KRH42721 Soybean extracellular, nucleus 84.42 82.33
VIT_05s0062g00610.t01 Wine grape cytosol 78.99 82.26
VIT_05s0062g00480.t01 Wine grape cytosol 78.62 81.89
Solyc12g098610.1.1 Tomato nucleus 75.0 79.31
VIT_05s0062g00250.t01 Wine grape extracellular 79.71 78.85
VIT_05s0062g00240.t01 Wine grape extracellular 80.07 78.65
PGSC0003DMT400056316 Potato extracellular 76.81 76.81
Solyc09g092520.2.1 Tomato nucleus 76.45 76.45
PGSC0003DMT400011902 Potato extracellular 74.64 73.84
CDY61576 Canola vacuole 74.28 73.21
Bra038442.1-P Field mustard extracellular 76.09 72.66
CDY27126 Canola extracellular 75.72 72.32
AT4G14130.1 Thale cress extracellular 75.36 71.97
Bra014975.1-P Field mustard extracellular, vacuole 75.36 71.48
AT3G23730.1 Thale cress extracellular, vacuole 73.19 69.42
KRH37378 Soybean nucleus 66.67 69.17
KRH02892 Soybean extracellular 71.01 68.29
KRH19003 Soybean extracellular 71.01 68.29
KRH19136 Soybean nucleus 69.93 68.2
KRH02893 Soybean extracellular 70.29 68.07
KRH02890 Soybean extracellular 70.29 68.07
KRH19005 Soybean vacuole 69.93 67.72
KRH19002 Soybean extracellular 68.84 66.67
KRH02894 Soybean endoplasmic reticulum, extracellular 70.29 66.44
KRH02895 Soybean cytosol 67.75 63.82
CDY12366 Canola extracellular 64.86 63.03
KRH59064 Soybean extracellular 65.58 61.15
KRH02889 Soybean extracellular 64.13 60.82
KRH42944 Soybean extracellular 64.13 60.2
KRH19006 Soybean vacuole 63.77 60.07
KRH12375 Soybean extracellular 66.67 58.23
KRH73676 Soybean extracellular 54.71 53.36
KRH14468 Soybean extracellular 54.71 52.43
KRH41530 Soybean nucleus 52.9 51.59
KRG98913 Soybean vacuole 52.54 50.35
KRH39331 Soybean nucleus 51.81 49.48
KRH06776 Soybean endoplasmic reticulum 52.54 49.15
KRH76320 Soybean nucleus 51.09 48.79
KRH22496 Soybean extracellular 50.36 47.93
KRG94750 Soybean endoplasmic reticulum 51.09 47.8
KRH26853 Soybean vacuole 49.64 46.28
KRH70105 Soybean nucleus 51.81 46.28
KRH35625 Soybean vacuole 49.28 45.95
KRH25426 Soybean extracellular 49.28 45.64
KRH04364 Soybean extracellular 48.19 45.55
KRH56088 Soybean vacuole 48.91 45.45
KRH58172 Soybean extracellular, vacuole 47.83 45.36
KRG94748 Soybean extracellular, vacuole 42.39 45.17
KRG91154 Soybean extracellular 48.19 44.93
KRH77174 Soybean extracellular 47.46 44.26
KRH28311 Soybean extracellular, vacuole 46.74 43.43
KRH06775 Soybean endoplasmic reticulum 52.17 41.74
KRG91233 Soybean extracellular 44.2 40.53
KRH35587 Soybean extracellular 43.84 40.07
Protein Annotations
EntrezGene:100784191Gene3D:2.60.120.200MapMan:50.2.4EMBL:ACUP02007146EMBL:BT098882InterPro:Beta_glucanase
UniProt:C6TMD1InterPro:ConA-like_dom_sfInterPro:GH16InterPro:GH16_ASEnsemblPlantsGene:GLYMA_11G253900GO:GO:0003674
GO:GO:0003824GO:GO:0004553GO:GO:0005575GO:GO:0005576GO:GO:0005618GO:GO:0005623
GO:GO:0005975GO:GO:0006073GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0010411
GO:GO:0016043GO:GO:0016740GO:GO:0016762GO:GO:0016787GO:GO:0016798GO:GO:0030312
GO:GO:0042546GO:GO:0048046GO:GO:0071555InterPro:IPR000757EnsemblPlants:KRH31558ProteinID:KRH31558
ProteinID:KRH31558.1PFAM:PF00722PFAM:PF06955PIRSF:PIRSF005604PRINTS:PR00737ScanProsite:PS01034
PFscan:PS51257PFscan:PS51762PANTHER:PTHR31062PANTHER:PTHR31062:SF62SUPFAM:SSF49899SignalP:SignalP-noTM
TMHMM:TMhelixUniParc:UPI0001B1721CInterPro:XET_CInterPro:XTHSEG:seg:
Description
hypothetical protein
Coordinates
chr11:+:34447365..34449046
Molecular Weight (calculated)
31709.5 Da
IEP (calculated)
9.156
GRAVY (calculated)
-0.364
Length
276 amino acids
Sequence
(BLAST)
001: MASSRNEFYA LMVVVVVGSI VASCGANFNQ DFDLTWGDQR AKIFNGGQLL SLSLDKVSGS GFQSKKEYLF GRIDMQLKLV AGNSAGTVTA YYLSSQGPTH
101: DEIDFEFLGN VSGDPYILHT NVFTQGQGNR EQQFYLWFDP TRNFHTYSII WKPQHIIFLV DNIPIRVFKN GETIGVPFPK KQPMRIYSSL WNADDWATRG
201: GLVKTDWSKA PFTAYYRNFK ATEFSTNSFS DAAWQSNELD AYGRRKLRWV QKYFMIYNYC NDLKRFPQGI PVECRR
Best Arabidopsis Sequence Match ( AT3G23730.1 )
(BLAST)
001: MGRILNRTVL MTLLVVTMAG TAFSGSFNEE FDLTWGEHRG KIFSGGKMLS LSLDRVSGSG FKSKKEYLFG RIDMQLKLVA GNSAGTVTAY YLSSEGPTHD
101: EIDFEFLGNE TGKPYVLHTN VFAQGKGNRE QQFYLWFDPT KNFHTYSLVW RPQHIIFMVD NVPIRVFNNA EQLGVPFPKN QPMKIYSSLW NADDWATRGG
201: LVKTDWSKAP FTAYYRGFNA AACTVSSGSS FCDPKFKSSF TNGESQVANE LNAYGRRRLR WVQKYFMIYD YCSDLKRFPQ GFPPECRKSR V
Arabidopsis Description
XTH16Probable xyloglucan endotransglucosylase/hydrolase protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG58]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.