CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19002	Soybean	extracellular	88.05	90.53
KRH02890	Soybean	extracellular	76.79	78.95
KRH02893	Soybean	extracellular	76.79	78.95
KRH19005	Soybean	vacuole	76.45	78.6
KRH02892	Soybean	extracellular	76.79	78.4
KRH19003	Soybean	extracellular	75.43	77.0
KRH02894	Soybean	endoplasmic reticulum, extracellular	76.45	76.71
KRH19136	Soybean	nucleus	74.06	76.68
KRH37378	Soybean	nucleus	67.24	74.06
PGSC0003DMT400038413	Potato	extracellular	71.33	73.08
Solyc03g093080.2.1	Tomato	extracellular	70.99	72.73
Solyc03g093120.2.1	Tomato	extracellular	70.65	72.38
Solyc03g093130.2.1	Tomato	extracellular	70.65	72.13
Solyc03g093110.2.1	Tomato	extracellular	70.31	71.78
KRH02889	Soybean	extracellular	68.6	69.07
KRH19006	Soybean	vacuole	67.92	67.92
KRH31558	Soybean	nucleus	63.82	67.75
KRG97361	Soybean	nucleus	63.82	67.03
KRH42721	Soybean	extracellular, nucleus	63.48	65.72
KRH58823	Soybean	extracellular, nucleus	63.14	65.37
KRH12375	Soybean	extracellular	66.55	61.71
KRH42944	Soybean	extracellular	57.34	57.14
KRH59064	Soybean	extracellular	57.34	56.76
KRH41530	Soybean	nucleus	52.56	54.42
KRH14468	Soybean	extracellular	50.85	51.74
KRH73676	Soybean	extracellular	49.83	51.59
KRH76320	Soybean	nucleus	50.85	51.56
KRH39331	Soybean	nucleus	50.51	51.21
KRG98913	Soybean	vacuole	49.15	50.0
KRG94750	Soybean	endoplasmic reticulum	47.78	47.46
KRH06776	Soybean	endoplasmic reticulum	47.78	47.46
KRH58172	Soybean	extracellular, vacuole	46.76	47.08
KRH70105	Soybean	nucleus	49.49	46.93
KRH22496	Soybean	extracellular	46.08	46.55
KRH04364	Soybean	extracellular	45.73	45.89
KRH26853	Soybean	vacuole	45.73	45.27
KRH35625	Soybean	vacuole	45.05	44.59
KRH77174	Soybean	extracellular	45.05	44.59
KRH25426	Soybean	extracellular	45.05	44.3
KRH56088	Soybean	vacuole	44.71	44.11
KRG91154	Soybean	extracellular	44.37	43.92
KRH28311	Soybean	extracellular, vacuole	44.37	43.77
KRG91233	Soybean	extracellular	43.69	42.52
KRG94748	Soybean	extracellular, vacuole	37.54	42.47
KRH35587	Soybean	extracellular	43.34	42.05
KRH06775	Soybean	endoplasmic reticulum	48.81	41.45

Protein Annotations

EntrezGene:100782365	Gene3D:2.60.120.200	MapMan:50.2.4	EMBL:ACUP02010329	InterPro:ConA-like_dom_sf	InterPro:GH16
EnsemblPlantsGene:GLYMA_17G065400	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576
GO:GO:0005618	GO:GO:0005623	GO:GO:0005975	GO:GO:0006073	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010411	GO:GO:0016043	GO:GO:0016740	GO:GO:0016762	GO:GO:0016787
GO:GO:0016798	GO:GO:0030312	GO:GO:0042546	GO:GO:0048046	GO:GO:0071555	UniProt:I1MST0
InterPro:IPR000757	EnsemblPlants:KRH02895	ProteinID:KRH02895	ProteinID:KRH02895.1	PFAM:PF00722	PFAM:PF06955
PIRSF:PIRSF005604	PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF100	SUPFAM:SSF49899	UniParc:UPI00023D55B1
InterPro:XET_C	InterPro:XTH	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:5045475..5046951

Molecular Weight (calculated)

32986.4 Da

IEP (calculated)

5.708

GRAVY (calculated)

-0.480

Length

293 amino acids

Sequence
(BLAST)

001: MVAFAGDLNK DFDITWGDGR AKILNNGELL TLSLDKASGS GFQSKNEYLF GKIDMQLKLV PGNSAGTVTA YYLSSKGSTW DEIDYEFLGN LSGDPYILHT
101: NVFSQGKGDR EQQFYLWFDP TADFHTYSIT WNPQRIIFSV DGTPIREFKN LEPIGVPFPK NQPMRMYSSL WNADDWATRG GLVKTDWTQA PFTASYRNFN
201: AETCIWSSGA SSCAKTSSTS TTSSGSWLSQ ELDSAGHQRL KWVQKNYMIY NYCTDTKRFP QGLPPECNIS GEKNKATHSS YIFYDQNVIP ILV

Best Arabidopsis Sequence Match ( AT3G23730.1 )
(BLAST)

001: MGRILNRTVL MTLLVVTMAG TAFSGSFNEE FDLTWGEHRG KIFSGGKMLS LSLDRVSGSG FKSKKEYLFG RIDMQLKLVA GNSAGTVTAY YLSSEGPTHD
101: EIDFEFLGNE TGKPYVLHTN VFAQGKGNRE QQFYLWFDPT KNFHTYSLVW RPQHIIFMVD NVPIRVFNNA EQLGVPFPKN QPMKIYSSLW NADDWATRGG
201: LVKTDWSKAP FTAYYRGFNA AACTVSSGSS FCDPKFKSSF TNGESQVANE LNAYGRRRLR WVQKYFMIYD YCSDLKRFPQ GFPPECRKSR V

Arabidopsis Description

XTH16Probable xyloglucan endotransglucosylase/hydrolase protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG58]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.