CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 1
extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14130.1	KRH22291	AT2G42580.1	19000166
AT4G14130.1	KRH27037	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42721	Soybean	extracellular, nucleus	97.17	97.17
KRG97361	Soybean	nucleus	85.51	86.74
KRH31558	Soybean	nucleus	82.69	84.78
VIT_05s0062g00480.t01	Wine grape	cytosol	76.68	81.89
VIT_05s0062g00610.t01	Wine grape	cytosol	76.33	81.51
VIT_05s0062g00250.t01	Wine grape	extracellular	78.8	79.93
VIT_05s0062g00240.t01	Wine grape	extracellular	79.15	79.72
Solyc12g098610.1.1	Tomato	nucleus	71.73	77.78
Solyc09g092520.2.1	Tomato	nucleus	75.27	77.17
PGSC0003DMT400056316	Potato	extracellular	74.56	76.45
CDY61576	Canola	vacuole	72.79	73.57
Bra038442.1-P	Field mustard	extracellular	73.5	71.97
Bra014975.1-P	Field mustard	extracellular, vacuole	73.85	71.82
PGSC0003DMT400011902	Potato	extracellular	70.67	71.68
CDY27126	Canola	extracellular	73.14	71.63
AT3G23730.1	Thale cress	extracellular, vacuole	73.5	71.48
KRH37378	Soybean	nucleus	66.43	70.68
AT4G14130.1	Thale cress	extracellular	71.02	69.55
KRH19136	Soybean	nucleus	67.84	67.84
KRH02893	Soybean	extracellular	68.2	67.72
KRH19005	Soybean	vacuole	68.2	67.72
KRH02890	Soybean	extracellular	68.2	67.72
KRH19003	Soybean	extracellular	68.55	67.6
KRH02892	Soybean	extracellular	68.2	67.25
KRH02894	Soybean	endoplasmic reticulum, extracellular	67.84	65.75
KRH19002	Soybean	extracellular	65.37	64.91
KRH02895	Soybean	cytosol	65.37	63.14
CDY12366	Canola	extracellular	62.54	62.32
KRH02889	Soybean	extracellular	61.84	60.14
KRH59064	Soybean	extracellular	62.9	60.14
KRH42944	Soybean	extracellular	62.19	59.86
KRH19006	Soybean	vacuole	61.84	59.73
KRH12375	Soybean	extracellular	66.08	59.18
KRH73676	Soybean	extracellular	52.3	52.3
KRH14468	Soybean	extracellular	52.65	51.74
KRH41530	Soybean	nucleus	50.18	50.18
KRG98913	Soybean	vacuole	50.18	49.31
KRH06776	Soybean	endoplasmic reticulum	50.88	48.81
KRG94750	Soybean	endoplasmic reticulum	50.88	48.81
KRH76320	Soybean	nucleus	48.06	47.06
KRH39331	Soybean	nucleus	48.06	47.06
KRH22496	Soybean	extracellular	48.06	46.9
KRH70105	Soybean	nucleus	50.53	46.28
KRH56088	Soybean	vacuole	48.41	46.13
KRH25426	Soybean	extracellular	48.41	45.97
KRH35625	Soybean	vacuole	48.06	45.95
KRH26853	Soybean	vacuole	47.7	45.61
KRH58172	Soybean	extracellular, vacuole	46.29	45.02
KRH04364	Soybean	extracellular	46.29	44.86
KRG94748	Soybean	extracellular, vacuole	40.99	44.79
KRG91154	Soybean	extracellular	46.64	44.59
KRH77174	Soybean	extracellular	46.29	44.26
KRH28311	Soybean	extracellular, vacuole	45.23	43.1
KRH06775	Soybean	endoplasmic reticulum	51.59	42.32
KRG91233	Soybean	extracellular	43.11	40.53
KRH35587	Soybean	extracellular	42.76	40.07

Protein Annotations

EntrezGene:100811671	Gene3D:2.60.120.200	MapMan:50.2.4	UniProt:A0A0R0JVY2	EMBL:ACUP02003292	InterPro:Beta_glucanase
InterPro:ConA-like_dom_sf	InterPro:GH16	InterPro:GH16_AS	EnsemblPlantsGene:GLYMA_05G150400	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975
GO:GO:0006073	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010411	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016740	GO:GO:0016762	GO:GO:0016787	GO:GO:0016798
GO:GO:0030312	GO:GO:0042546	GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757	EnsemblPlants:KRH58823
ProteinID:KRH58823	ProteinID:KRH58823.1	PFAM:PF00722	PFAM:PF06955	PIRSF:PIRSF005604	PRINTS:PR00737
ScanProsite:PS01034	PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF20	SUPFAM:SSF49899	SignalP:SignalP-TM
TMHMM:TMhelix	UniParc:UPI0001B63973	InterPro:XET_C	InterPro:XTH	:	:

Description

hypothetical protein

Coordinates

chr5:+:34429993..34432911

Molecular Weight (calculated)

32335.3 Da

IEP (calculated)

9.284

GRAVY (calculated)

-0.351

Length

283 amino acids

Sequence
(BLAST)

001: MAPSSTHNTG FYVLMLVGIV ISTMVATCAG SFYQDFDLTW GGDRAKIFNG GQLLSLSLDK VSGSGFKSKK EYLFGRIDMQ LKLVAGNSAG TVTAYYLSSQ
101: GPTHDEIDFE FLGNLSGDPY ILHTNIFTQG KGNREQQFYL WFDPTRNFHT YSIIWKPQHI IFLVDNTPIR VFKNAESLGV PFPKNQPMRI YSSLWNADDW
201: ATRGGLVKTD WSKAPFTAYY RNFKATEFSL KSSISNSGAE YEANELDSYS RRRLRWVQKY FMIYNYCSDL KRFPQGLPAE CRR

Best Arabidopsis Sequence Match ( AT3G23730.1 )
(BLAST)

001: MGRILNRTVL MTLLVVTMAG TAFSGSFNEE FDLTWGEHRG KIFSGGKMLS LSLDRVSGSG FKSKKEYLFG RIDMQLKLVA GNSAGTVTAY YLSSEGPTHD
101: EIDFEFLGNE TGKPYVLHTN VFAQGKGNRE QQFYLWFDPT KNFHTYSLVW RPQHIIFMVD NVPIRVFNNA EQLGVPFPKN QPMKIYSSLW NADDWATRGG
201: LVKTDWSKAP FTAYYRGFNA AACTVSSGSS FCDPKFKSSF TNGESQVANE LNAYGRRRLR WVQKYFMIYD YCSDLKRFPQ GFPPECRKSR V

Arabidopsis Description

XTH16Probable xyloglucan endotransglucosylase/hydrolase protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG58]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.