Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14130.1 | CDY42827 | AT2G42580.1 | 19000166 |
| AT4G14130.1 | CDY51514 | AT2G42580.1 | 19000166 |
| AT4G14130.1 | CDY55390 | AT2G42580.1 | 19000166 |
| AT4G14130.1 | CDY61202 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038442.1-P | Field mustard | extracellular | 99.31 | 99.31 |
| AT4G14130.1 | Thale cress | extracellular | 91.35 | 91.35 |
| CDY12366 | Canola | extracellular | 85.81 | 87.32 |
| CDY61576 | Canola | vacuole | 83.05 | 85.71 |
| VIT_05s0062g00610.t01 | Wine grape | cytosol | 71.97 | 78.49 |
| VIT_05s0062g00480.t01 | Wine grape | cytosol | 71.28 | 77.74 |
| KRH31558 | Soybean | nucleus | 72.32 | 75.72 |
| KRG97361 | Soybean | nucleus | 73.01 | 75.63 |
| Solyc12g098610.1.1 | Tomato | nucleus | 67.13 | 74.33 |
| VIT_05s0062g00240.t01 | Wine grape | extracellular | 71.97 | 74.02 |
| PGSC0003DMT400056316 | Potato | extracellular | 70.59 | 73.91 |
| VIT_05s0062g00250.t01 | Wine grape | extracellular | 71.28 | 73.84 |
| Solyc09g092520.2.1 | Tomato | nucleus | 70.24 | 73.55 |
| KRH42721 | Soybean | extracellular, nucleus | 71.63 | 73.14 |
| KRH58823 | Soybean | extracellular, nucleus | 71.63 | 73.14 |
| PGSC0003DMT400011902 | Potato | extracellular | 67.82 | 70.25 |
| CDY39193 | Canola | extracellular | 58.13 | 61.76 |
| CDX89393 | Canola | extracellular | 60.9 | 61.32 |
| CDX72228 | Canola | extracellular | 58.82 | 60.93 |
| CDY14905 | Canola | extracellular | 57.09 | 60.89 |
| CDY66832 | Canola | extracellular | 57.09 | 60.89 |
| CDX94413 | Canola | extracellular | 60.21 | 60.63 |
| CDY67778 | Canola | extracellular | 59.52 | 60.56 |
| CDX68640 | Canola | extracellular | 58.82 | 60.28 |
| CDY28174 | Canola | extracellular | 58.82 | 60.28 |
| CDY25904 | Canola | extracellular | 59.17 | 60.21 |
| CDY02738 | Canola | extracellular, nucleus, vacuole | 44.64 | 60.0 |
| CDY59999 | Canola | extracellular | 51.21 | 59.92 |
| CDY69806 | Canola | extracellular | 57.09 | 58.1 |
| CDY67488 | Canola | extracellular | 56.75 | 57.95 |
| CDY25903 | Canola | extracellular | 51.9 | 57.69 |
| CDY11863 | Canola | extracellular | 57.09 | 57.69 |
| CDY67487 | Canola | extracellular | 51.56 | 57.31 |
| CDX72227 | Canola | extracellular | 53.63 | 57.2 |
| CDX88627 | Canola | extracellular | 56.4 | 56.99 |
| CDY50186 | Canola | extracellular | 56.4 | 56.99 |
| CDY67779 | Canola | extracellular | 56.4 | 56.99 |
| CDX92733 | Canola | extracellular | 56.06 | 56.64 |
| CDY03539 | Canola | endoplasmic reticulum, extracellular | 57.09 | 52.88 |
| CDY59998 | Canola | extracellular | 51.21 | 52.3 |
| CDX69621 | Canola | vacuole | 51.21 | 50.51 |
| CDY09832 | Canola | vacuole | 51.21 | 50.51 |
| CDY49308 | Canola | extracellular | 54.67 | 50.32 |
| CDX78542 | Canola | vacuole | 51.56 | 50.0 |
| CDX70524 | Canola | vacuole | 51.21 | 49.66 |
| CDY02741 | Canola | extracellular | 50.17 | 49.32 |
| CDX93096 | Canola | extracellular | 50.17 | 49.15 |
| CDY69237 | Canola | extracellular | 49.83 | 48.81 |
| CDY13000 | Canola | endoplasmic reticulum, extracellular, nucleus | 53.63 | 47.4 |
| CDY21985 | Canola | extracellular | 46.71 | 46.55 |
| CDX90896 | Canola | extracellular | 46.71 | 46.55 |
| CDY53771 | Canola | extracellular | 46.71 | 46.55 |
| CDY22110 | Canola | extracellular | 46.37 | 46.21 |
| CDY45623 | Canola | extracellular | 43.94 | 44.56 |
| CDY08756 | Canola | extracellular | 43.94 | 44.56 |
| CDX72656 | Canola | extracellular, vacuole | 44.98 | 44.52 |
| CDY06861 | Canola | extracellular | 44.64 | 44.18 |
| CDY35228 | Canola | extracellular | 44.64 | 44.18 |
| CDY31620 | Canola | extracellular, vacuole | 44.64 | 44.03 |
| CDX97967 | Canola | extracellular | 42.56 | 41.14 |
| CDY49788 | Canola | extracellular | 42.21 | 40.8 |
| CDX71167 | Canola | vacuole | 41.18 | 40.07 |
Protein Annotations
| KEGG:00500+2.4.1.20 | Gene3D:2.60.120.200 | MapMan:50.2.4 | GO:A0A078GP88 | UniProt:A0A078GP88 | EnsemblPlants:CDY27126 |
| ProteinID:CDY27126 | ProteinID:CDY27126.1 | InterPro:ConA-like_dom_sf | InterPro:GH16 | InterPro:GH16_AS | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005623 |
| GO:GO:0005975 | GO:GO:0006073 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010411 |
| GO:GO:0016043 | GO:GO:0016740 | GO:GO:0016762 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0030312 |
| GO:GO:0042546 | GO:GO:0048046 | GO:GO:0071555 | EnsemblPlantsGene:GSBRNA2T00036960001 | InterPro:IPR000757 | PFAM:PF00722 |
| PFAM:PF06955 | PIRSF:PIRSF005604 | ScanProsite:PS01034 | PFscan:PS51762 | PANTHER:PTHR31062 | PANTHER:PTHR31062:SF62 |
| SUPFAM:SSF49899 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EE1FFE | InterPro:XET_C | InterPro:XTH |
Description
BnaA08g07640DXyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A078GP88]
Coordinates
chrLK032200:-:133009..134286
Molecular Weight (calculated)
33016.3 Da
IEP (calculated)
9.606
GRAVY (calculated)
-0.351
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQSSSFTTI MVAVLLVMMF GSAYSGNFFN EFDLTWGDHR GKIFNGGNML SLSLDRVSGS GFKSKKEYLF GRIDMQLKLV AGNSAGTVTT YYLSSQGATH
101: DEIDFEFLGN ETGKPYVLHT NVFAQGKGNR EQQFYLWFDP TKNFHTYSIV WRPQHIIFLV DNLPIRVFNN AEKLGVPFPK NQPMMIYSSL WNADDWATRG
201: GLVKTDWSKA PFTAYYRGFN AAACTVSSGC DPKFKTSLSD SELQTANELN AYGRRRLRWV QKYFMIYNYC SDLKRFPRGF PPECRRSRV
101: DEIDFEFLGN ETGKPYVLHT NVFAQGKGNR EQQFYLWFDP TKNFHTYSIV WRPQHIIFLV DNLPIRVFNN AEKLGVPFPK NQPMMIYSSL WNADDWATRG
201: GLVKTDWSKA PFTAYYRGFN AAACTVSSGC DPKFKTSLSD SELQTANELN AYGRRRLRWV QKYFMIYNYC SDLKRFPRGF PPECRRSRV
001: MGPSSSLTTI VATVLLVTLF GSAYASNFFD EFDLTWGDHR GKIFNGGNML SLSLDQVSGS GFKSKKEYLF GRIDMQLKLV AGNSAGTVTA YYLSSQGATH
101: DEIDFEFLGN ETGKPYVLHT NVFAQGKGDR EQQFYLWFDP TKNFHTYSIV WRPQHIIFLV DNLPIRVFNN AEKLGVPFPK SQPMRIYSSL WNADDWATRG
201: GLVKTDWSKA PFTAYYRGFN AAACTASSGC DPKFKSSFGD GKLQVATELN AYGRRRLRWV QKYFMIYNYC SDLKRFPRGF PPECKKSRV
101: DEIDFEFLGN ETGKPYVLHT NVFAQGKGDR EQQFYLWFDP TKNFHTYSIV WRPQHIIFLV DNLPIRVFNN AEKLGVPFPK SQPMRIYSSL WNADDWATRG
201: GLVKTDWSKA PFTAYYRGFN AAACTASSGC DPKFKSSFGD GKLQVATELN AYGRRRLRWV QKYFMIYNYC SDLKRFPRGF PPECKKSRV
Arabidopsis Description
XTH15Xyloglucan endotransglucosylase/hydrolase protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q38911]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.