Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 7
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013922.1-P | Field mustard | extracellular | 100.0 | 100.0 |
| CDX94413 | Canola | extracellular | 98.26 | 98.26 |
| AT4G25810.1 | Thale cress | extracellular | 91.99 | 92.31 |
| CDY25903 | Canola | extracellular | 77.35 | 85.38 |
| CDY67487 | Canola | extracellular | 76.31 | 84.23 |
| CDY59999 | Canola | extracellular | 72.47 | 84.21 |
| KRH19136 | Soybean | nucleus | 72.13 | 73.14 |
| CDY39193 | Canola | extracellular | 68.99 | 72.79 |
| VIT_11s0052g01220.t01 | Wine grape | extracellular | 71.78 | 72.28 |
| CDY28174 | Canola | extracellular | 70.38 | 71.63 |
| CDX68640 | Canola | extracellular | 70.38 | 71.63 |
| CDY02741 | Canola | extracellular | 73.17 | 71.43 |
| KRH37378 | Soybean | nucleus | 65.85 | 71.05 |
| CDX72228 | Canola | extracellular | 68.99 | 70.97 |
| CDY14905 | Canola | extracellular | 66.9 | 70.85 |
| CDY66832 | Canola | extracellular | 66.55 | 70.48 |
| PGSC0003DMT400036329 | Potato | extracellular | 67.25 | 68.44 |
| VIT_11s0052g01250.t01 | Wine grape | extracellular | 67.25 | 66.78 |
| Solyc05g046290.2.1 | Tomato | extracellular | 66.55 | 66.32 |
| CDX72227 | Canola | extracellular | 62.37 | 66.05 |
| Solyc07g009380.2.1 | Tomato | extracellular, nucleus | 62.72 | 65.45 |
| CDY25904 | Canola | extracellular | 64.11 | 64.79 |
| CDY67778 | Canola | extracellular | 63.76 | 64.44 |
| CDY03539 | Canola | endoplasmic reticulum, extracellular | 66.9 | 61.54 |
| CDY02738 | Canola | extracellular, nucleus, vacuole | 45.99 | 61.4 |
| CDY27126 | Canola | extracellular | 61.32 | 60.9 |
| CDY67488 | Canola | extracellular | 59.93 | 60.78 |
| CDY11863 | Canola | extracellular | 60.28 | 60.49 |
| CDY67779 | Canola | extracellular | 60.28 | 60.49 |
| KRH12375 | Soybean | extracellular | 66.55 | 60.44 |
| CDY59998 | Canola | extracellular | 59.58 | 60.42 |
| CDY61576 | Canola | vacuole | 58.88 | 60.36 |
| CDY69806 | Canola | extracellular | 59.58 | 60.21 |
| CDX88627 | Canola | extracellular | 59.58 | 59.79 |
| CDY50186 | Canola | extracellular | 57.14 | 57.34 |
| CDX92733 | Canola | extracellular | 56.79 | 56.99 |
| CDY49308 | Canola | extracellular | 61.32 | 56.05 |
| CDY13000 | Canola | endoplasmic reticulum, extracellular, nucleus | 60.63 | 53.21 |
| CDY12366 | Canola | extracellular | 50.52 | 51.06 |
| CDX69621 | Canola | vacuole | 50.87 | 49.83 |
| CDY09832 | Canola | vacuole | 50.87 | 49.83 |
| CDX78542 | Canola | vacuole | 50.87 | 48.99 |
| CDX70524 | Canola | vacuole | 50.52 | 48.66 |
| CDY45623 | Canola | extracellular | 47.04 | 47.37 |
| CDY08756 | Canola | extracellular | 47.04 | 47.37 |
| CDX93096 | Canola | extracellular | 48.43 | 47.12 |
| CDY69237 | Canola | extracellular | 48.08 | 46.78 |
| CDY53771 | Canola | extracellular | 47.04 | 46.55 |
| CDY21985 | Canola | extracellular | 47.04 | 46.55 |
| CDY06861 | Canola | extracellular | 47.04 | 46.23 |
| CDY35228 | Canola | extracellular | 47.04 | 46.23 |
| CDX90896 | Canola | extracellular | 46.69 | 46.21 |
| CDY22110 | Canola | extracellular | 46.69 | 46.21 |
| CDX72656 | Canola | extracellular, vacuole | 46.69 | 45.89 |
| CDY31620 | Canola | extracellular, vacuole | 46.34 | 45.39 |
| CDY49788 | Canola | extracellular | 44.6 | 42.81 |
| CDX97967 | Canola | extracellular | 43.9 | 42.14 |
| CDX71167 | Canola | vacuole | 41.81 | 40.4 |
Protein Annotations
| KEGG:00500+2.4.1.20 | Gene3D:2.60.120.200 | MapMan:50.2.4 | GO:A0A078DQA1 | EnsemblPlants:CDX89393 | ProteinID:CDX89393 |
| ProteinID:CDX89393.1 | InterPro:ConA-like_dom_sf | InterPro:GH16 | InterPro:GH16_AS | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004553 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0005975 |
| GO:GO:0006073 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010411 | GO:GO:0016043 |
| GO:GO:0016740 | GO:GO:0016762 | GO:GO:0016787 | GO:GO:0030312 | GO:GO:0042546 | GO:GO:0048046 |
| GO:GO:0071555 | EnsemblPlantsGene:GSBRNA2T00149628001 | InterPro:IPR000757 | PFAM:PF00722 | PFAM:PF06955 | PIRSF:PIRSF005604 |
| ScanProsite:PS01034 | PFscan:PS51762 | PANTHER:PTHR31062 | PANTHER:PTHR31062:SF20 | SUPFAM:SSF49899 | SignalP:SignalP-noTM |
| UniParc:UPI0002546A19 | InterPro:XET_C | InterPro:XTH | SEG:seg | : | : |
Description
BnaA01g15000D
Coordinates
chrLK031858:-:1329329..1330965
Molecular Weight (calculated)
32114.5 Da
IEP (calculated)
5.109
GRAVY (calculated)
-0.431
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMINYSTIL SPLLAAIMIY SVSANFHQDV EITWGDGRGQ ITNNGDLLTL SLDKSSGSGF QSKNEYLFGK IDMQIKLVAG NSAGTVTAYY LKSSGSTWDE
101: IDFEFLGNLS GDPYTLHTNV FTQGKGDREQ QFKLWFDPTI DFHTYSILWN PQRIIFSVDG TPIREFKNME SQGTLFPKNQ PMRMYSSLWN AEDWATRGGL
201: VKTDWSKAPF TASYRGFSEE ACVVSNGKSS CSNGSGQGSS SGSWLSQELD STGQERMRWV QSNYMIYNYC TDAKRFPQGL PRECLSA
101: IDFEFLGNLS GDPYTLHTNV FTQGKGDREQ QFKLWFDPTI DFHTYSILWN PQRIIFSVDG TPIREFKNME SQGTLFPKNQ PMRMYSSLWN AEDWATRGGL
201: VKTDWSKAPF TASYRGFSEE ACVVSNGKSS CSNGSGQGSS SGSWLSQELD STGQERMRWV QSNYMIYNYC TDAKRFPQGL PRECLSA
001: MAMISYSTIV VALLASFMIC SVSANFQRDV EITWGDGRGQ ITNNGDLLTL SLDKASGSGF QSKNEYLFGK IDMQIKLVAG NSAGTVTAYY LKSPGSTWDE
101: IDFEFLGNLS GDPYTLHTNV FTQGKGDREQ QFKLWFDPTS DFHTYSILWN PQRIIFSVDG TPIREFKNME SQGTLFPKNQ PMRMYSSLWN AEEWATRGGL
201: VKTDWSKAPF TASYRGFNEE ACVVINGQSS CPNVSGQGST GSWLSQELDS TGQEQMRWVQ NNYMIYNYCT DAKRFPQGLP RECLAA
101: IDFEFLGNLS GDPYTLHTNV FTQGKGDREQ QFKLWFDPTS DFHTYSILWN PQRIIFSVDG TPIREFKNME SQGTLFPKNQ PMRMYSSLWN AEEWATRGGL
201: VKTDWSKAPF TASYRGFNEE ACVVINGQSS CPNVSGQGST GSWLSQELDS TGQEQMRWVQ NNYMIYNYCT DAKRFPQGLP RECLAA
Arabidopsis Description
XTH23Probable xyloglucan endotransglucosylase/hydrolase protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q38910]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.