Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89393 | Canola | extracellular | 92.31 | 91.99 |
| Bra013922.1-P | Field mustard | extracellular | 92.31 | 91.99 |
| Bra008806.1-P | Field mustard | extracellular | 92.31 | 91.99 |
| CDX94413 | Canola | extracellular | 91.96 | 91.64 |
| AT5G57560.1 | Thale cress | extracellular | 81.12 | 81.69 |
| KRH19136 | Soybean | nucleus | 72.03 | 72.79 |
| VIT_11s0052g01220.t01 | Wine grape | extracellular | 71.68 | 71.93 |
| KRH37378 | Soybean | nucleus | 65.73 | 70.68 |
| AT4G30270.1 | Thale cress | extracellular | 66.08 | 70.26 |
| PGSC0003DMT400036329 | Potato | extracellular | 67.83 | 68.79 |
| AT5G57550.1 | Thale cress | extracellular | 66.08 | 66.55 |
| Solyc05g046290.2.1 | Tomato | extracellular | 66.43 | 65.97 |
| VIT_11s0052g01250.t01 | Wine grape | extracellular | 66.08 | 65.4 |
| Solyc07g009380.2.1 | Tomato | extracellular, nucleus | 62.59 | 65.09 |
| AT4G14130.1 | Thale cress | extracellular | 61.54 | 60.9 |
| AT5G57540.1 | Thale cress | extracellular | 59.79 | 60.21 |
| AT3G23730.1 | Thale cress | extracellular, vacuole | 61.19 | 60.14 |
| KRH12375 | Soybean | extracellular | 66.43 | 60.13 |
| AT5G57530.1 | Thale cress | extracellular | 59.79 | 60.0 |
| AT4G25820.1 | Thale cress | extracellular | 59.79 | 59.58 |
| AT2G18800.1 | Thale cress | extracellular | 62.59 | 58.69 |
| AT5G13870.2 | Thale cress | extracellular, vacuole | 50.35 | 49.15 |
| AT2G06850.1 | Thale cress | extracellular | 47.9 | 46.28 |
| AT4G28850.1 | Thale cress | extracellular | 47.2 | 46.23 |
| AT4G37800.1 | Thale cress | extracellular, vacuole | 46.5 | 45.39 |
| AT5G65730.1 | Thale cress | extracellular | 45.45 | 44.52 |
| AT4G03210.1 | Thale cress | extracellular | 45.1 | 44.48 |
| AT1G11545.1 | Thale cress | extracellular | 44.76 | 41.97 |
| AT2G14620.1 | Thale cress | vacuole | 43.01 | 41.14 |
Protein Annotations
| Gene3D:2.60.120.200 | MapMan:50.2.4 | EntrezGene:828686 | ProteinID:AEE85117.1 | ArrayExpress:AT4G25810 | EnsemblPlantsGene:AT4G25810 |
| RefSeq:AT4G25810 | TAIR:AT4G25810 | RefSeq:AT4G25810-TAIR-G | EnsemblPlants:AT4G25810.1 | TAIR:AT4G25810.1 | EMBL:AY062472 |
| EMBL:AY093252 | ProteinID:CAB39602.1 | ProteinID:CAB79436.1 | InterPro:ConA-like_dom_sf | InterPro:GH16 | InterPro:GH16_AS |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005618 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005975 | GO:GO:0006073 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010411 | GO:GO:0016043 | GO:GO:0016740 |
| GO:GO:0016762 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0030312 | GO:GO:0042546 | GO:GO:0048046 |
| GO:GO:0071555 | InterPro:IPR000757 | RefSeq:NP_194311.1 | PFAM:PF00722 | PFAM:PF06955 | PIRSF:PIRSF005604 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS01034 |
| PFscan:PS51762 | PANTHER:PTHR31062 | PANTHER:PTHR31062:SF20 | UniProt:Q38910 | SUPFAM:SSF49899 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | EMBL:U43488 | UniParc:UPI00000489EC | InterPro:XET_C | InterPro:XTH | Symbol:XTR6 |
Description
XTH23Probable xyloglucan endotransglucosylase/hydrolase protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q38910]
Coordinates
chr4:+:13128394..13129927
Molecular Weight (calculated)
32065.6 Da
IEP (calculated)
4.803
GRAVY (calculated)
-0.381
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMISYSTIV VALLASFMIC SVSANFQRDV EITWGDGRGQ ITNNGDLLTL SLDKASGSGF QSKNEYLFGK IDMQIKLVAG NSAGTVTAYY LKSPGSTWDE
101: IDFEFLGNLS GDPYTLHTNV FTQGKGDREQ QFKLWFDPTS DFHTYSILWN PQRIIFSVDG TPIREFKNME SQGTLFPKNQ PMRMYSSLWN AEEWATRGGL
201: VKTDWSKAPF TASYRGFNEE ACVVINGQSS CPNVSGQGST GSWLSQELDS TGQEQMRWVQ NNYMIYNYCT DAKRFPQGLP RECLAA
101: IDFEFLGNLS GDPYTLHTNV FTQGKGDREQ QFKLWFDPTS DFHTYSILWN PQRIIFSVDG TPIREFKNME SQGTLFPKNQ PMRMYSSLWN AEEWATRGGL
201: VKTDWSKAPF TASYRGFNEE ACVVINGQSS CPNVSGQGST GSWLSQELDS TGQEQMRWVQ NNYMIYNYCT DAKRFPQGLP RECLAA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.