Factsheet for Solyc12g098610.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 3
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011902	Potato	extracellular	97.7	91.4
Solyc09g092520.2.1	Tomato	nucleus	84.67	80.07
VIT_05s0062g00610.t01	Wine grape	cytosol	77.39	76.23
VIT_05s0062g00480.t01	Wine grape	cytosol	77.01	75.85
KRH31558	Soybean	nucleus	79.31	75.0
KRG97361	Soybean	nucleus	79.69	74.55
KRH58823	Soybean	extracellular, nucleus	77.78	71.73
VIT_05s0062g00250.t01	Wine grape	extracellular	76.63	71.68
KRH42721	Soybean	extracellular, nucleus	77.39	71.38
VIT_05s0062g00240.t01	Wine grape	extracellular	76.25	70.82
AT4G14130.1	Thale cress	extracellular	75.48	68.17
CDY61576	Canola	vacuole	72.8	67.86
Bra038442.1-P	Field mustard	extracellular	74.33	67.13
CDY27126	Canola	extracellular	74.33	67.13
AT3G23730.1	Thale cress	extracellular, vacuole	73.95	66.32
Bra014975.1-P	Field mustard	extracellular, vacuole	73.18	65.64
Solyc03g093080.2.1	Tomato	extracellular	68.97	62.94
Solyc03g093130.2.1	Tomato	extracellular	68.58	62.37
Solyc03g093120.2.1	Tomato	extracellular	68.2	62.24
Solyc07g009380.2.1	Tomato	extracellular, nucleus	65.52	62.18
Solyc03g093110.2.1	Tomato	extracellular	67.82	61.67
Solyc07g006860.2.1	Tomato	extracellular	66.28	60.7
Solyc05g046290.2.1	Tomato	extracellular	66.67	60.42
Solyc07g006870.2.1	Tomato	extracellular, vacuole	64.37	59.57
Solyc07g056000.2.1	Tomato	extracellular, nucleus	64.37	58.54
Solyc12g017240.1.1	Tomato	extracellular	64.75	58.48
CDY12366	Canola	extracellular	62.45	57.39
Solyc07g055990.2.1	Tomato	nucleus	60.92	54.83
Solyc12g011030.1.1	Tomato	nucleus	55.94	52.71
Solyc12g007270.1.1	Tomato	extracellular	54.79	48.81
Solyc11g065600.1.1	Tomato	nucleus	54.02	48.12
Solyc11g040140.1.1	Tomato	extracellular	54.41	47.33
Solyc01g099630.2.1	Tomato	extracellular	53.26	46.96
Solyc12g007260.1.1	Tomato	extracellular	50.96	45.55
Solyc12g007250.1.1	Tomato	extracellular	50.57	45.36
Solyc03g098430.2.1	Tomato	extracellular	48.66	44.88
Solyc02g091920.2.1	Tomato	nucleus	49.04	43.39
Solyc07g052980.2.1	Tomato	extracellular	49.04	43.24
Solyc07g006850.1.1	Tomato	golgi	55.94	42.69
Solyc03g031800.2.1	Tomato	extracellular	45.21	40.0
Solyc10g005350.2.1	Tomato	extracellular	44.06	39.93
Solyc01g106650.2.1	Tomato	extracellular, vacuole	43.3	38.57
Solyc02g080160.2.1	Tomato	extracellular	43.68	38.26

Protein Annotations

Gene3D:2.60.120.200	MapMan:50.2.4	InterPro:ConA-like_dom_sf	InterPro:GH16	InterPro:GH16_AS	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0005975	GO:GO:0006073	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010411
GO:GO:0016043	GO:GO:0016740	GO:GO:0016762	GO:GO:0016787	GO:GO:0016798	GO:GO:0030312
GO:GO:0042546	GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757	UniProt:K4DHN4	PFAM:PF00722
PFAM:PF06955	PIRSF:PIRSF005604	ScanProsite:PS01034	PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF62
SUPFAM:SSF49899	EnsemblPlantsGene:Solyc12g098610.1	EnsemblPlants:Solyc12g098610.1.1	UniParc:UPI000276A206	InterPro:XET_C	InterPro:XTH

Description

Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:K4DHN4]

Coordinates

chr12:-:66051503..66053221

Molecular Weight (calculated)

30521.1 Da

IEP (calculated)

9.581

GRAVY (calculated)

-0.572

Length

261 amino acids

Sequence
(BLAST)

001: MNSCMFSCGG NFIQEFDFNW GGNRVKIFNG GQILSLSMDK FSGSGFQSKK DYLFGRIDMQ LKLVTGNSAG TVTSYYLSSK GPTHDEIDFE FLGNVSGEPY
101: ILHTNVFSQG KGDKEQQFYL WFDPTKNFHT YSIIWKPQHI IFLVDNTPIR VFKNAESLGV PFPKNQPMKI YSSLWNADDW ATRGGLVKTD WSKAPFTAYY
201: RNFYAQKFNK SQFLDAKWQN QELDANGRRR LRWVQRNYMI YNYCTDYKRF PQGFPLECRK F

Best Arabidopsis Sequence Match ( AT3G23730.1 )
(BLAST)

001: MGRILNRTVL MTLLVVTMAG TAFSGSFNEE FDLTWGEHRG KIFSGGKMLS LSLDRVSGSG FKSKKEYLFG RIDMQLKLVA GNSAGTVTAY YLSSEGPTHD
101: EIDFEFLGNE TGKPYVLHTN VFAQGKGNRE QQFYLWFDPT KNFHTYSLVW RPQHIIFMVD NVPIRVFNNA EQLGVPFPKN QPMKIYSSLW NADDWATRGG
201: LVKTDWSKAP FTAYYRGFNA AACTVSSGSS FCDPKFKSSF TNGESQVANE LNAYGRRRLR WVQKYFMIYD YCSDLKRFPQ GFPPECRKSR V

Arabidopsis Description

XTH16Probable xyloglucan endotransglucosylase/hydrolase protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG58]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.