Factsheet for Solyc03g093080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g093130.2.1	Tomato	extracellular	98.6	98.26
Solyc03g093120.2.1	Tomato	extracellular	98.25	98.25
Solyc03g093110.2.1	Tomato	extracellular	97.2	96.86
PGSC0003DMT400038413	Potato	extracellular	95.1	95.1
VIT_11s0052g01330.t01	Wine grape	extracellular, vacuole	72.38	79.01
KRH02893	Soybean	extracellular	76.92	77.19
KRH02890	Soybean	extracellular	76.92	77.19
VIT_11s0052g01280.t01	Wine grape	endoplasmic reticulum, extracellular	79.72	77.03
KRH19005	Soybean	vacuole	76.57	76.84
VIT_11s0052g01320.t01	Wine grape	extracellular	79.37	76.69
VIT_11s0052g01200.t01	Wine grape	extracellular	79.02	76.09
VIT_11s0052g01260.t01	Wine grape	endoplasmic reticulum, extracellular	78.67	76.01
VIT_11s0052g01300.t01	Wine grape	extracellular	78.32	75.68
KRH19002	Soybean	extracellular	74.83	75.09
VIT_11s0052g01270.t01	Wine grape	extracellular	77.27	74.41
KRH02892	Soybean	extracellular	74.48	74.22
KRH02894	Soybean	endoplasmic reticulum, extracellular	75.52	73.97
KRH19003	Soybean	extracellular	73.43	73.17
VIT_11s0052g01310.t01	Wine grape	extracellular	68.53	72.86
VIT_11s0052g01340.t01	Wine grape	extracellular	69.23	72.79
KRH02895	Soybean	cytosol	72.73	70.99
Solyc07g006860.2.1	Tomato	extracellular	70.63	70.88
VIT_11s0052g01180.t01	Wine grape	cytosol	78.67	70.09
Solyc07g009380.2.1	Tomato	extracellular, nucleus	66.43	69.09
Solyc12g098610.1.1	Tomato	nucleus	62.94	68.97
Solyc05g046290.2.1	Tomato	extracellular	68.53	68.06
Solyc09g092520.2.1	Tomato	nucleus	65.38	67.75
Solyc07g006870.2.1	Tomato	extracellular, vacuole	65.03	65.96
VIT_11s0052g01190.t01	Wine grape	vacuole	80.07	62.06
Solyc07g056000.2.1	Tomato	extracellular, nucleus	60.49	60.28
Solyc12g017240.1.1	Tomato	extracellular	60.49	59.86
Solyc07g055990.2.1	Tomato	nucleus	59.09	58.28
Solyc12g011030.1.1	Tomato	nucleus	53.5	55.23
Solyc07g006850.1.1	Tomato	golgi	65.03	54.39
Solyc12g007270.1.1	Tomato	extracellular	54.2	52.9
Solyc12g007250.1.1	Tomato	extracellular	50.7	49.83
Solyc12g007260.1.1	Tomato	extracellular	49.65	48.63
Solyc11g065600.1.1	Tomato	nucleus	49.65	48.46
Solyc07g052980.2.1	Tomato	extracellular	48.95	47.3
Solyc03g098430.2.1	Tomato	extracellular	46.5	47.0
Solyc01g099630.2.1	Tomato	extracellular	47.9	46.28
Solyc11g040140.1.1	Tomato	extracellular	48.25	46.0
Solyc02g091920.2.1	Tomato	nucleus	46.85	45.42
Solyc03g031800.2.1	Tomato	extracellular	44.41	43.05
Solyc10g005350.2.1	Tomato	extracellular	42.31	42.01
Solyc01g106650.2.1	Tomato	extracellular, vacuole	42.31	41.3
Solyc02g080160.2.1	Tomato	extracellular	43.01	41.28

Protein Annotations

Gene3D:2.60.120.200	MapMan:50.2.4	InterPro:ConA-like_dom_sf	InterPro:GH16	InterPro:GH16_AS	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0005975	GO:GO:0006073	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010411
GO:GO:0016043	GO:GO:0016740	GO:GO:0016762	GO:GO:0016787	GO:GO:0016798	GO:GO:0030312
GO:GO:0042546	GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757	UniProt:K4BII5	PFAM:PF00722
PFAM:PF06955	PIRSF:PIRSF005604	ScanProsite:PS01034	PFscan:PS51762	PANTHER:PTHR31062	PANTHER:PTHR31062:SF101
SUPFAM:SSF49899	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc03g093080.2	EnsemblPlants:Solyc03g093080.2.1	TMHMM:TMhelix	UniParc:UPI0002768EE4
InterPro:XET_C	InterPro:XTH	SEG:seg	:	:	:

Description

Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:K4BII5]

Coordinates

chr3:-:54267479..54268694

Molecular Weight (calculated)

32069.2 Da

IEP (calculated)

5.318

GRAVY (calculated)

-0.447

Length

286 amino acids

Sequence
(BLAST)

001: MASSSKLVLV MCFMISAFGI AIGAKFDQEF DITWGDGRAK ILNNGDLLTL SLDKISGSGF QSKNEYLFGK IDMQLKLVPG NSAGTVTAYY LSSQGPTHDE
101: IDFEFLGNLS GDPYTLHTNV FSQGKGNREQ QFHLWFDPTA DFHTYSITWN PQRIIFYVDG TPIREYKNSE SIGVSYPKNQ PMRIYSSLWN ADDWATRGGL
201: VKTDWSQAPF SASYRNFSAN ACIPTSSSSC SSNSAASTSN SWLNEELDNT SQERLKWVQK NYMVYNYCTD SKRFPQGFPA DCVQNN

Best Arabidopsis Sequence Match ( AT4G25810.1 )
(BLAST)

001: MAMISYSTIV VALLASFMIC SVSANFQRDV EITWGDGRGQ ITNNGDLLTL SLDKASGSGF QSKNEYLFGK IDMQIKLVAG NSAGTVTAYY LKSPGSTWDE
101: IDFEFLGNLS GDPYTLHTNV FTQGKGDREQ QFKLWFDPTS DFHTYSILWN PQRIIFSVDG TPIREFKNME SQGTLFPKNQ PMRMYSSLWN AEEWATRGGL
201: VKTDWSKAPF TASYRGFNEE ACVVINGQSS CPNVSGQGST GSWLSQELDS TGQEQMRWVQ NNYMIYNYCT DAKRFPQGLP RECLAA

Arabidopsis Description

XTH23Probable xyloglucan endotransglucosylase/hydrolase protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q38910]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.