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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 9
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • nucleus 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, nucleus, secretory
BaCelLo:secretory
EpiLoc:nucleus
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:cytosol, extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
extracellular: 26583031
msms PMID: 26583031 doi
F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken
Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400048241 Potato extracellular 94.74 94.74
Solyc03g093080.2.1 Tomato extracellular 70.88 70.63
Solyc03g093120.2.1 Tomato extracellular 70.18 69.93
Solyc03g093130.2.1 Tomato extracellular 69.82 69.34
Solyc03g093110.2.1 Tomato extracellular 69.12 68.64
GSMUA_Achr10P... Banana extracellular 65.96 66.67
Solyc12g098610.1.1 Tomato nucleus 60.7 66.28
KRH02889 Soybean extracellular 67.37 65.98
Solyc05g046290.2.1 Tomato extracellular 66.67 65.97
GSMUA_Achr6P30850_001 Banana extracellular 65.26 65.96
Solyc09g092520.2.1 Tomato nucleus 63.16 65.22
KRH19006 Soybean vacuole 67.02 65.19
GSMUA_Achr10P... Banana extracellular 63.86 63.19
Solyc07g009380.2.1 Tomato extracellular, nucleus 60.35 62.55
Solyc07g006870.2.1 Tomato extracellular, vacuole 61.4 62.06
Bra038819.1-P Field mustard cytosol, extracellular, nucleus 51.58 61.51
Solyc07g056000.2.1 Tomato extracellular, nucleus 61.05 60.63
HORVU7Hr1G098370.1 Barley extracellular 60.35 60.35
AT2G18800.1 Thale cress extracellular 64.56 60.33
TraesCS7B01G327400.1 Wheat extracellular 60.0 60.0
Solyc12g017240.1.1 Tomato extracellular 60.7 59.86
TraesCS7A01G427100.1 Wheat extracellular 59.65 59.65
TraesCS7A01G427300.1 Wheat extracellular 59.3 59.3
TraesCS7D01G419400.1 Wheat vacuole 59.65 59.23
CDY49308 Canola extracellular 64.91 58.92
Os06t0696600-01 Rice extracellular 59.3 58.68
EER90302 Sorghum extracellular 58.25 57.64
Solyc07g055990.2.1 Tomato nucleus 58.6 57.59
CDY13000 Canola endoplasmic reticulum, extracellular, nucleus 62.81 54.74
Solyc12g011030.1.1 Tomato nucleus 51.58 53.07
Solyc12g007270.1.1 Tomato extracellular 52.98 51.54
Solyc12g007260.1.1 Tomato extracellular 52.63 51.37
Solyc12g007250.1.1 Tomato extracellular 52.28 51.2
Solyc07g006850.1.1 Tomato golgi 58.25 48.54
Solyc11g065600.1.1 Tomato nucleus 48.42 47.1
Solyc03g098430.2.1 Tomato extracellular 46.67 47.0
Solyc02g091920.2.1 Tomato nucleus 47.72 46.1
Solyc11g040140.1.1 Tomato extracellular 48.42 46.0
Solyc01g099630.2.1 Tomato extracellular 46.67 44.93
Solyc07g052980.2.1 Tomato extracellular 45.96 44.26
Solyc03g031800.2.1 Tomato extracellular 44.21 42.71
Zm00001d014614_P001 Maize nucleus, plastid 55.79 42.18
Zm00001d014615_P002 Maize extracellular 55.79 42.18
Solyc10g005350.2.1 Tomato extracellular 42.46 42.01
Solyc02g080160.2.1 Tomato extracellular 43.51 41.61
Solyc01g106650.2.1 Tomato extracellular, vacuole 42.11 40.96
Protein Annotations
Gene3D:2.60.120.200MapMan:50.2.4InterPro:ConA-like_dom_sfInterPro:GH16InterPro:GH16_ASGO:GO:0003674
GO:GO:0003824GO:GO:0004553GO:GO:0005575GO:GO:0005576GO:GO:0005618GO:GO:0005623
GO:GO:0005975GO:GO:0006073GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0010411GO:GO:0016043GO:GO:0016740GO:GO:0016762GO:GO:0016787GO:GO:0016798
GO:GO:0030312GO:GO:0042545GO:GO:0042546GO:GO:0048046GO:GO:0071555GO:GO:0080022
InterPro:IPR000757UniProt:K4CBF7PFAM:PF00722PFAM:PF06955PIRSF:PIRSF005604ScanProsite:PS01034
PFscan:PS51762PANTHER:PTHR31062PANTHER:PTHR31062:SF101SUPFAM:SSF49899SignalP:SignalP-noTMEnsemblPlantsGene:Solyc07g006860.2
EnsemblPlants:Solyc07g006860.2.1UniParc:UPI000276C9BBInterPro:XET_CInterPro:XTHSEG:seg:
Description
Probable xyloglucan endotransglucosylase/hydrolase protein 21 [Source:Projected from Arabidopsis thaliana (AT2G18800) UniProtKB/Swiss-Prot;Acc:Q9ZV40]
Coordinates
chr7:+:1717942..1719773
Molecular Weight (calculated)
32573.3 Da
IEP (calculated)
7.804
GRAVY (calculated)
-0.362
Length
285 amino acids
Sequence
(BLAST)
001: MASLVLCLVI LAFCSLHYSL ASNNFNQDFD VTWGDGRAKV LNNGKLLTLS LDKVSGSGVK SKKEYLFGRI DMQLKLVRGN SAGTVTTYYL SSQGSTHDEI
101: DFEFLGNLSG DPYIVHTNVY TQGKGDKEQQ FYLWFDPTAD FHTYSILWNP QTIIFYVDGT PIRVFKNMES SGVPYPNKQP MRVYASLWNA DDWATRGGLV
201: KTNWSNAPFI AYFRNFKDNN ACIWEFGKSS CTNSTKSWFY HELDSTSQAR LQWVQKNYMV YNYCNDINRF PRGLPLECAF NSTTN
Best Arabidopsis Sequence Match ( AT5G57560.1 )
(BLAST)
001: MAITYLLPLF LSLIITSSVS ANFQRDVEIT WGDGRGQIKN NGELLTLSLD KSSGSGFQSK NEYLFGKVSM QMKLVPGNSA GTVTTLYLKS PGTTWDEIDF
101: EFLGNSSGEP YTLHTNVYTQ GKGDKEQQFK LWFDPTANFH TYTILWNPQR IIFTVDGTPI REFKNMESLG TLFPKNKPMR MYSSLWNADD WATRGGLVKT
201: DWSKAPFTAS YRGFQQEACV WSNGKSSCPN ASKQGTTTGS WLSQELDSTA QQRMRWVQRN YMIYNYCTDA KRFPQGLPKE CLAA
Arabidopsis Description
XTH22Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178UQX4]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.